; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019709 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019709
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold5:30911932..30917995
RNA-Seq ExpressionSpg019709
SyntenySpg019709
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-2843.52Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+++P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  KEKE   QRTS F  I P VAR  VF+RL++ E E +  Q T++  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEELSASSISHRFQYED
        R   F+RL+M    E+        TRPSAF+RL+M      +    +   RP +F RL           S+ T++ KE  S +S+  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEELSASSISHRFQYED

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-0836.75Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR
        E+K+ L ++ V + +     + ++          +  L+QFGT +P+VVQF +E   + S+EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR

Query:  KAKFQKKKGKKKSRRSK
          K +K K KKK+++ K
Subjt:  KAKFQKKKGKKKSRRSK

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-2854.48Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  +QR SVF  IRP VAR +VF+RL++ EAE E  Q   +  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLN
        R  VFRRL+     EEST      TRPSAF+RL+
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLN

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.1e-2843.75Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  +QR SVF  IRP VAR +VF+RL++ EAE E  Q   S  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED
        R  VFRRL+     EEST      TRPSAF+RL +      S    +   R  +F  L          S    + KE +S   +  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.7e-1952Show/hide
Query:  RWKGIEIREDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKRSKDTLNPDVMSVMMTDIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQL
        R KGI I+      A+A  I K + ES K  + +K+NPL+      S RS    +PDVMSVMM D+  +  MAEMERK+NLLMK VDERD EIA LK Q+
Subjt:  RWKGIEIREDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKRSKDTLNPDVMSVMMTDIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQL

Query:  QNRETAESSQTPLIQFGTLDPIVVQ
        Q RETAESSQTP+++       VVQ
Subjt:  QNRETAESSQTPLIQFGTLDPIVVQ

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.5e-1533.14Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR
        E+++ L ++ V + +     + ++  +       +  L+QFGT +PIVVQF +E + +  Q +   IE+++EGW +V  RKK++    ++ESR +++ +R
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR

Query:  KAKFQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAAYFPRYFLDDSQEEALETVTCHIVDVVEDDDVPASS
          K QK K KKK+ + K V  E  +F  P + +TLA + P+ FL D Q+E  E V CH ++  E++ +P  S
Subjt:  KAKFQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAAYFPRYFLDDSQEEALETVTCHIVDVVEDDDVPASS

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.1e-2843.75Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  +QR SVF  IRP VAR +VF+RL++ EAE E  Q   S  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED
        R  VFRRL+     EEST      TRPSAF+RL +      S    +   R  +F  L          S    + KE +S   +  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]1.1e-2743.23Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+S+P +RKGLGYKSPEP+RI ++GK KV D NHIT+EE D++  KE  +QR SVF  IRP VAR +VF+RL++ EAE E  Q   +  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED
        R  VFRRL+     EEST      TRPSAF+RL +      S    +   R  +F  L          S    + KE +S   +  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL----------SVTTRRDKEELSASSISHRFQYED

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein5.0e-2943.52Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+++P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  KEKE   QRTS F  I P VAR  VF+RL++ E E +  Q T++  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEELSASSISHRFQYED
        R   F+RL+M    E+        TRPSAF+RL+M      +    +   RP +F RL           S+ T++ KE  S +S+  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL-----------SVTTRRDKEELSASSISHRFQYED

A0A5A7TJZ7 Retrotransposon gag protein2.2e-0836.75Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR
        E+K+ L ++ V + +     + ++          +  L+QFGT +P+VVQF +E   + S+EK  SIE+++EGW +V RRKK+K +  +KESR +R+ +R
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKR

Query:  KAKFQKKKGKKKSRRSK
          K +K K KKK+++ K
Subjt:  KAKFQKKKGKKKSRRSK

A0A5A7TJZ7 Retrotransposon gag protein1.2e-2744.57Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  +QRTS F  I P VARA VF+RL++ EA+ +  Q      
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSIS
                           ST N+ R SAFQRL +   EE+    T   T+PS F+RLS+T +++ +   A  I+
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSIS

A0A5A7UD46 Uncharacterized protein2.7e-2749.63Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHIT++E D  +EKE   QRTS F  I P VARA VF++L++ EAE +  Q T++  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM
        R   F+RL++   +E+    T   T+PSAF+RL++
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNM

A0A5A7UMH1 Uncharacterized protein1.6e-2744.32Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   K+KLL+EG+++P +RKGLGYKSPEP+RI  +GK KV D NHITV+EVD  +EKE   QRTS F  I P V RA VF+RL++ EAE +  Q      
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSISH
                           ST NV + SAFQRL +   EE+        T+PS F+RLS+T +++ +   A  I+H
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRLSVTTRRDKEELSASSISH

A0A5D3D7W3 Uncharacterized protein8.8e-2640.64Show/hide
Query:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST
        L   ++KLL+EG+ +P +RKGLGYKSPEP+RI ++GK KV D N IT++EVD  +EKE   QRTS F  I P VA A VF+RL++ +AE +  Q T++  
Subjt:  LVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSST

Query:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEEST-----FSTLDVTRPSVFQRLSVTTRRDKEELSASSISHRFQYED
        R   F+RL+M    E+        TRP  F+RL++   +   T      + L+   P V    S+ T++ KE  S +S+  R ++ D
Subjt:  RPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEEST-----FSTLDVTRPSVFQRLSVTTRRDKEELSASSISHRFQYED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGGCGTTGGAAGGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGT
CAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAGCGGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGACTGATATAGACCAAGATGAAA
GAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAACCGAGAAACGGCTGAG
TCTAGCCAGACCCCTTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCAATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGA
TGAGAACGAAGGTTGGACCCTTGTCATTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTTTCAAA
AGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGCATACTTCCCAAGGTAC
TTTCTCGATGATAGTCAAGAAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCAGAGCC
ACAGGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGTGAAACCTAAGAGGAAACTTCTAAAGGAAG
GTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTG
GAAGAGGTTGATGACTCAAAGGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCACATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAATGT
CAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTTAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTC
CGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTA
AGTGTTACCACGAGAAGAGACAAAGAAGAACTATCTGCTTCATCGATTTCTCACCGATTTCAGTATGAGGATGCGATGAAAAATGAAAAGATCACGAAGGCTGAAGCGAC
GTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGGCGTTGGAAGGGAATTGAGATCAGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGT
CAAAGACAACCCGCTATTCGAATCTGTCATTCCAACATCTAAGCGGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGACTGATATAGACCAAGATGAAA
GAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAACCGAGAAACGGCTGAG
TCTAGCCAGACCCCTTTGATTCAATTTGGGACCCTTGATCCCATAGTGGTTCAATTCCAAAAAGAAGCCACGATGAAGGGATCCCAAGAAAAATATATTTCCATCGAAGA
TGAGAACGAAGGTTGGACCCTTGTCATTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGACAATAAAAGAAAGGCTAAGTTTCAAA
AGAAGAAAGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCATGGAAGAAAGTGAAGATTTCTTTTGTCCTCCACAACCCATAACTTTGGCAGCATACTTCCCAAGGTAC
TTTCTCGATGATAGTCAAGAAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGCTCCTCGGGAACGATGGCAGAGCC
ACAGGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCCGACCTGAAAAAGGGTGAAGCATCTACAAGCCTTGTGAAACCTAAGAGGAAACTTCTAAAGGAAG
GTTATAGTCTGCCTACAACGAGAAAAGGACTGGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTG
GAAGAGGTTGATGACTCAAAGGAAAAAGAGAGTGTCGACCAACGAACTTCTGTTTTTAGGCACATCAGGCCACCGGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAATGT
CAATGAAGCGGAAGAAGAAAGCACACAACCTACCAATAGCTCCACTCGACCTTTAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGATGAAGAGAGTACATTTTCAACTC
CGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAGGAGAGTACATTTTCAACTTTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTA
AGTGTTACCACGAGAAGAGACAAAGAAGAACTATCTGCTTCATCGATTTCTCACCGATTTCAGTATGAGGATGCGATGAAAAATGAAAAGATCACGAAGGCTGAAGCGAC
GTGA
Protein sequenceShow/hide protein sequence
MLRRWKGIEIREDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKRSKDTLNPDVMSVMMTDIDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAE
SSQTPLIQFGTLDPIVVQFQKEATMKGSQEKYISIEDENEGWTLVIRRKKQKQSYARKESRLFRDNKRKAKFQKKKGKKKSRRSKPVMEESEDFFCPPQPITLAAYFPRY
FLDDSQEEALETVTCHIVDVVEDDDVPASSSGTMAEPQADARKEAVEDVNTSDLKKGEASTSLVKPKRKLLKEGYSLPTTRKGLGYKSPEPVRIIRRGKAKVADTNHITV
EEVDDSKEKESVDQRTSVFRHIRPPVARALVFQRLNVNEAEEESTQPTNSSTRPLVFRRLSMPIGDEESTFSTPNVTRPSAFQRLNMPIGEEESTFSTLDVTRPSVFQRL
SVTTRRDKEELSASSISHRFQYEDAMKNEKITKAEAT