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Spg019718 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019718
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold5:36164422..36166693
RNA-Seq ExpressionSpg019718
SyntenySpg019718
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]1.9e-2462.96Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDE--DPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS Q ++E  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDE--DPDYDLDD

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.8e-2039.44Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF   +   +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +   ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                   ASPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]1.2e-2040.14Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F  ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                   ASPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]5.1e-2269.33Show/hide
Query:  FSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADF
        ++T++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N EFLNDKSKLLAALAQ T+DADF
Subjt:  FSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADF

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.6e-2039.44Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F  ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                    SPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7SWC0 Uncharacterized protein9.0e-2562.96Show/hide
Query:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDE--DPDYDLDD
        + K LKIK W+K+NFQ+AT+  +KEWFA N YLQDID ++N EFLNDKSKLL ALAQ T+DADFQR+L  A    +SS SP+SS Q ++E  DP+YDLDD
Subjt:  VTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMA----ASSASPASSAQGEDE--DPDYDLDD

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

A0A5A7TBK1 Retrotransposable element Tf21.3e-2039.44Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF   +   +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +   ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                   ASPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

A0A5A7U3G5 Polyprotein6.0e-2140.14Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F  ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                   ASPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

A0A5A7UZX0 Polyprotein2.5e-2269.33Show/hide
Query:  FSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADF
        ++T++ PQYK + K LKIKWW K+NFQ+AT+  +KEWFA NGYLQDID ++N EFLNDKSKLLAALAQ T+DADF
Subjt:  FSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADF

A0A5A7V6D1 Retrotransposable element Tf27.9e-2139.44Show/hide
Query:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--
        RF LYFQIPWIFCWNF       +K ++K L+IKWW+KFN+ +  +NK+K+WF AN +LQD+  + +  FL  K+ +++ LA  ++  +F  ++      
Subjt:  RFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAA--

Query:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP
                    SPAS    +D D D     D++DPFLD+QP
Subjt:  ---------SSASPASSAQGEDEDPD----YDLDDPFLDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTCTGTCTATATTTTCAAATTCCATGGATTTTTTGCTGGAATTTCTCAACCAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTG
GGATAAATTCAATTTCCAGAACGCAACCCTCAACAAAGTTAAAGAGTGGTTTGCAGCCAATGGATATCTTCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATG
ACAAATCCAAGCTCCTAGCAGCTCTAGCACAGACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGCGCGTCCCCAGCTTCTTCTGCTCAAGGA
GAAGACGAAGATCCGGATTACGATCTGGACGACCCGTTCCTCGACTCACAACCCATTCCGGAGTCTATAAAAGACTTCAAGTTTGTATTGCAAAGGCATGCGCTGAGAAC
TCTCAAGCTATCTTCTCTTGTAAAGCTTGAATCTCACCTTGCTTTCTTTTATCAGCTAGTCGATCCTCATAAGGGAATCCCTGGGAGCCGAATAGAGGAGGAAAGATTGG
AGACTTCAAAAAGACCATCAACTACAGATTTGACCAAGGGAATTAATCTTTTCTTCGTCTCGACACTGCCGCTTCAGCTTGACTCCCACATTCTTTCCCTATTTGCACGG
CGTCCCGACGCTGATCTAGGAGGGTCTCGACGCTGGGAAGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGATTTTGCTCATTTAAGCCCAGAATTGCTTCTAAAGCT
CCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTCTGTCTATATTTTCAAATTCCATGGATTTTTTGCTGGAATTTCTCAACCAGCAATCAACCTCAGTACAAAACAGTCACCAAGATCCTAAAGATCAAGTGGTG
GGATAAATTCAATTTCCAGAACGCAACCCTCAACAAAGTTAAAGAGTGGTTTGCAGCCAATGGATATCTTCAGGATATCGACATCAAGAGGAATGCAGAATTTCTCAATG
ACAAATCCAAGCTCCTAGCAGCTCTAGCACAGACCACATCTGATGCAGATTTTCAAAGAATTCTCCAGATGGCGGCTTCAAGCGCGTCCCCAGCTTCTTCTGCTCAAGGA
GAAGACGAAGATCCGGATTACGATCTGGACGACCCGTTCCTCGACTCACAACCCATTCCGGAGTCTATAAAAGACTTCAAGTTTGTATTGCAAAGGCATGCGCTGAGAAC
TCTCAAGCTATCTTCTCTTGTAAAGCTTGAATCTCACCTTGCTTTCTTTTATCAGCTAGTCGATCCTCATAAGGGAATCCCTGGGAGCCGAATAGAGGAGGAAAGATTGG
AGACTTCAAAAAGACCATCAACTACAGATTTGACCAAGGGAATTAATCTTTTCTTCGTCTCGACACTGCCGCTTCAGCTTGACTCCCACATTCTTTCCCTATTTGCACGG
CGTCCCGACGCTGATCTAGGAGGGTCTCGACGCTGGGAAGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGATTTTGCTCATTTAAGCCCAGAATTGCTTCTAAAGCT
CCGATGA
Protein sequenceShow/hide protein sequence
MRFCLYFQIPWIFCWNFSTSNQPQYKTVTKILKIKWWDKFNFQNATLNKVKEWFAANGYLQDIDIKRNAEFLNDKSKLLAALAQTTSDADFQRILQMAASSASPASSAQG
EDEDPDYDLDDPFLDSQPIPESIKDFKFVLQRHALRTLKLSSLVKLESHLAFFYQLVDPHKGIPGSRIEEERLETSKRPSTTDLTKGINLFFVSTLPLQLDSHILSLFAR
RPDADLGGSRRWEVSKGRMVILRSDFAHLSPELLLKLR