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Spg019735 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019735
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S11
Genome locationscaffold5:28996259..28998016
RNA-Seq ExpressionSpg019735
SyntenySpg019735
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR032440 - 40S ribosomal protein S11, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OIV97265.1 hypothetical protein TanjilG_10799 [Lupinus angustifolius]3.6e-4078.57Show/hide
Query:  VVYNLLKSI---SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTV
        V +N+LK I   SSTGTYIDKKCPFTG VSIRG I+AGT + AKM RTIIVR NYLHY+ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRP+S TV
Subjt:  VVYNLLKSI---SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTV

Query:  RFNVLKVILASS
        RFNVLKVI A S
Subjt:  RFNVLKVILASS

XP_022143218.1 40S ribosomal protein S11-like [Momordica charantia]1.8e-3985Show/hide
Query:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        ++ GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_022937629.1 40S ribosomal protein S11-like [Cucurbita moschata]2.3e-3987.63Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_022952178.1 40S ribosomal protein S11-like [Cucurbita moschata]2.3e-3987.63Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

XP_022965991.1 40S ribosomal protein S11-like [Cucurbita maxima]2.3e-3987.63Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

TrEMBL top hitse value%identityAlignment
A0A161X2Z3 Ribosomal_S17_N domain-containing protein1.1e-3985Show/hide
Query:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        SS+GTYIDKKCPFTG VSIRG ILAGT + AKM+RTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A1J7GSJ2 Uncharacterized protein1.7e-4078.57Show/hide
Query:  VVYNLLKSI---SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTV
        V +N+LK I   SSTGTYIDKKCPFTG VSIRG I+AGT + AKM RTIIVR NYLHY+ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRP+S TV
Subjt:  VVYNLLKSI---SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTV

Query:  RFNVLKVILASS
        RFNVLKVI A S
Subjt:  RFNVLKVILASS

A0A6J1CQ61 40S ribosomal protein S11-like8.6e-4085Show/hide
Query:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        ++ GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  SSTGTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A6J1HN55 40S ribosomal protein S11-like1.1e-3987.63Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

A0A6J1HZI1 40S ribosomal protein S11-like1.1e-3987.63Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG ILAGT + AKMVRTIIVR NYLHYV KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

SwissProt top hitse value%identityAlignment
P16181 40S ribosomal protein S11-11.1e-3981.44Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G Y+DKKCPFTGTVSIRG ILAGT + AKM RTIIVR +YLH+V KYQRYEKRHSNIPAH++PCFRVK GDH+IIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P17093 40S ribosomal protein S113.2e-3982.47Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTG VSIRG ILAGT + AKM RTIIVR NYLH++ KYQRYEKRHSNIPAH++P FRVK GDHVIIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P25460 40S ribosomal protein S112.2e-4083.51Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        GTYIDKKCPFTGTVSIRG I+AGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNV+KVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

P42733 40S ribosomal protein S11-31.4e-3982.47Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G YID KCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A +
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

Q9M5M1 40S ribosomal protein S114.4e-4180.58Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQV
        GTYIDKKCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH++ KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A S   
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQV

Query:  VRR
        V++
Subjt:  VRR

Arabidopsis top hitse value%identityAlignment
AT3G48930.1 Nucleic acid-binding, OB-fold-like protein7.7e-4181.44Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G Y+DKKCPFTGTVSIRG ILAGT + AKM RTIIVR +YLH+V KYQRYEKRHSNIPAH++PCFRVK GDH+IIGQCRPLS TVRFNVLKVI A S
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein3.2e-3974.76Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQV
        GTYID+KCPFTGTVSIRG IL+GT + AKM RTIIVR +YLH+V KY+RYEKRHSNIPAH++PCFRVK GD V IGQCRPLS TVRFNVLKVI A S  +
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASSPQV

Query:  VRR
         ++
Subjt:  VRR

AT5G23740.1 ribosomal protein S11-beta1.0e-4082.47Show/hide
Query:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS
        G YID KCPFTGTVSIRG ILAGT + AKM RTIIVR NYLH+V KYQRYEKRHSNIPAH++PCFRVK GDHVIIGQCRPLS TVRFNVLKVI A +
Subjt:  GTYIDKKCPFTGTVSIRGHILAGT-YDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVGDHVIIGQCRPLSNTVRFNVLKVILASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCTCCCTCAAATTCATCACACTACGCTACGGTTCCCACAAGCCCATTCTAAGGCCGGAGAATAGCGGGGAGATCTTGATGGTCGTCTACAACTTACTGAAGAG
TATTTCTTCTACAGGGACATATATAGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCATATATTGGCTGGTACCTACGATGCCAAGATGGTGAGAACCA
TCATTGTTAGAGGTAATTATCTCCACTATGTGGGGAAGTACCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATGACGCCTTGCTTCAGGGTGAAAGTAGGA
GACCATGTTATCATTGGCCAATGCAGGCCATTGTCGAACACAGTGAGGTTTAATGTATTGAAAGTGATTCTTGCTAGTTCACCACAAGTGGTAAGAAGGATTTCGCAGGA
ATTTAAGTCCATAAATTTCAGGTTCCATGTGGACAAGATGTCATCTGTCCATGTTTATGTGAGATTGCAAAAAGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCTCCCTCAAATTCATCACACTACGCTACGGTTCCCACAAGCCCATTCTAAGGCCGGAGAATAGCGGGGAGATCTTGATGGTCGTCTACAACTTACTGAAGAG
TATTTCTTCTACAGGGACATATATAGATAAGAAGTGTCCATTCACTGGCACTGTTTCTATTAGGGGGCATATATTGGCTGGTACCTACGATGCCAAGATGGTGAGAACCA
TCATTGTTAGAGGTAATTATCTCCACTATGTGGGGAAGTACCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATGACGCCTTGCTTCAGGGTGAAAGTAGGA
GACCATGTTATCATTGGCCAATGCAGGCCATTGTCGAACACAGTGAGGTTTAATGTATTGAAAGTGATTCTTGCTAGTTCACCACAAGTGGTAAGAAGGATTTCGCAGGA
ATTTAAGTCCATAAATTTCAGGTTCCATGTGGACAAGATGTCATCTGTCCATGTTTATGTGAGATTGCAAAAAGGGTAG
Protein sequenceShow/hide protein sequence
MVFSLKFITLRYGSHKPILRPENSGEILMVVYNLLKSISSTGTYIDKKCPFTGTVSIRGHILAGTYDAKMVRTIIVRGNYLHYVGKYQRYEKRHSNIPAHMTPCFRVKVG
DHVIIGQCRPLSNTVRFNVLKVILASSPQVVRRISQEFKSINFRFHVDKMSSVHVYVRLQKG