; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019760 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019760
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:33874041..33876648
RNA-Seq ExpressionSpg019760
SyntenySpg019760
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0838.26Show/hide
Query:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETD-----AIEVVKAINRESEDLSDLKIFT
        KLNS A+W E+ G GG+ W++HDS GS IC   K++ +KW +K LE  AM+EG+K        L IR  V         +E+ + +N    DL +L    
Subjt:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETD-----AIEVVKAINRESEDLSDLKIFT

Query:  DEIKALATRAFSMNF
        DEI  L   A  ++F
Subjt:  DEIKALATRAFSMNF

XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]3.4e-0827.13Show/hide
Query:  TTVKRSEAKESRESSLMGEGWKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVK
        T+++RS              +KLN+DA+   K+  GGLG +V D+ G ++    K +N    I  +EA A+L G++ V D   R   +LEV +D ++V++
Subjt:  TTVKRSEAKESRESSLMGEGWKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVK

Query:  AINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSLSSPAKSPGQSSSSREREDCFWAPNIPIWAFPLIN
         +N    + S  ++   +I + A     + FS+C R  N  AH +A  +   S                 E+ FW  + P   +PL++
Subjt:  AINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSLSSPAKSPGQSSSSREREDCFWAPNIPIWAFPLIN

XP_021847414.1 uncharacterized protein LOC110787151 [Spinacia oleracea]6.4e-0732.31Show/hide
Query:  EGW-KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGI-RLEVETDAIEVVKAINRESEDLSDLKIFT
        EGW K+N DA    + G  G+G ++ D EG ++   ++Q  +KWA    EA A+L G+    + C  LG+ R+ VE+D + V++A+ RE+   S+  +  
Subjt:  EGW-KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGI-RLEVETDAIEVVKAINRESEDLSDLKIFT

Query:  DEIKALATRAFSMNFSYCNRFLNTAAHCVA
        ++I A  +   ++ +S+  R  N  AH +A
Subjt:  DEIKALATRAFSMNFSYCNRFLNTAAHCVA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.8e-1029.08Show/hide
Query:  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG-----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQ
        SW+I + +NY  ++ +   F  +   L  T+F+     Q+    S   ++  + L  E      W LN+DA+W +    GG+GW++   +G ++  G + 
Subjt:  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG-----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQ

Query:  VNQKWAIKNLEACAMLEGIKEVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAA
        V     +K LEA A+LEG++ +++    LG+   L +ETD+ EV   +NR+ EDL+      +EI  L      + F+   R  N  AH +A+ A+
Subjt:  VNQKWAIKNLEACAMLEGIKEVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.4e-0626.62Show/hide
Query:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-SDTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIF
        WKLN+DAAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +  + C  +       + +E+D++E +  ++R+ +D +++   
Subjt:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-SDTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIF

Query:  TDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL
         +EI  +      ++  + +R  N  AH +AR A    L
Subjt:  TDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL

TrEMBL top hitse value%identityAlignment
A0A5B7BU49 RNase H domain-containing protein (Fragment)3.1e-0735.43Show/hide
Query:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIR-LEVETDAIEVVKAINRESEDLSDLKIFTDEI
        +KLN  A+W   E CGG+G ++ D +G +I    KQ+     I   EA A+L G+    D    +G++ L VE D + V+ AI    EDLS+L    D I
Subjt:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIR-LEVETDAIEVVKAINRESEDLSDLKIFTDEI

Query:  KALATRAFSMNFSYCNRFLNTAAHCVA
        K       S +F +  R  N+ AH +A
Subjt:  KALATRAFSMNFSYCNRFLNTAAHCVA

A0A6J1CP26 uncharacterized protein LOC1110134126.9e-0726.87Show/hide
Query:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIK
        WKLN++AAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +     R    + +E+D++E +  ++R+ +D +++    +EI 
Subjt:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIK

Query:  ALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL
         +      ++  + +R  N  AH +AR A    L
Subjt:  ALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL

A0A6J1D4B6 uncharacterized protein LOC1110171819.1e-0732.31Show/hide
Query:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCN-RLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEI
        WKLN DA W +    GGLGW+V DSEG  I                    M E +K +S +     GI++E+E+D +EVV  IN+ S  L+++ +  ++I
Subjt:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCN-RLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEI

Query:  KALATRAFSMNFSYCNRFLNTAAHCVARSA
                   F +     N  AH +AR A
Subjt:  KALATRAFSMNFSYCNRFLNTAAHCVARSA

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-1029.08Show/hide
Query:  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG-----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQ
        SW+I + +NY  ++ +   F  +   L  T+F+     Q+    S   ++  + L  E      W LN+DA+W +    GG+GW++   +G ++  G + 
Subjt:  SWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFL--GFTQTTVKRSEAKESRESSLMGEG-----WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQ

Query:  VNQKWAIKNLEACAMLEGIKEVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAA
        V     +K LEA A+LEG++ +++    LG+   L +ETD+ EV   +NR+ EDL+      +EI  L      + F+   R  N  AH +A+ A+
Subjt:  VNQKWAIKNLEACAMLEGIKEVSDTCNRLGI--RLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAA

A0A6J1DSV1 uncharacterized protein LOC1110236086.9e-0726.62Show/hide
Query:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-SDTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIF
        WKLN+DAAW      GG+GW++ D +G +I    + +  +  I  LE  A+ EG++ +  + C  +       + +E+D++E +  ++R+ +D +++   
Subjt:  WKLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEV-SDTCNRLGIR----LEVETDAIEVVKAINRESEDLSDLKIF

Query:  TDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL
         +EI  +      ++  + +R  N  AH +AR A    L
Subjt:  TDEIKALATRAFSMNFSYCNRFLNTAAHCVARSAAGRSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.9e-0428.68Show/hide
Query:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLG-IRLEVETDAIEVVKAINRESEDLSDLKIFTDEIK
        K N DA+  E +   GLGWL+ +S+G+++  GM +   +   +  E  A++  I+  S      G  ++  E D   V + IN +S D   LK + D IK
Subjt:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLG-IRLEVETDAIEVVKAINRESEDLSDLKIFTDEIK

Query:  ALATRAFSMNFSYCNRFLNTAAHCVARSA
        +      S  F + +R  N  A  + + A
Subjt:  ALATRAFSMNFSYCNRFLNTAAHCVARSA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0425.78Show/hide
Query:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKA
        K N DA+  E+    GLGW++ +S+G++I  GM +   +   +  E   ++  I+      ++   ++  E D   + + IN +S +   L+ F D I++
Subjt:  KLNSDAAWFEKEGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKA

Query:  LATRAFSMNFSYCNRFLNTAAHCVARSA
              S+ FS+ +R  N  A  +A+ A
Subjt:  LATRAFSMNFSYCNRFLNTAAHCVARSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCTGTGGCTGTGGTGGTGGTGGTTGCGATTGTTGTGGTTGATCTTGATTTTGCGAGAGCCTCCGCACCACCGACGAGGCTCCCCGTGGAGGAGCGGGCTTCGAC
ACACAGCTTCCTATCTTGGCTAATTATGAGTGTGAAAAACTACAGTAGATGGAAATCCAAATCCAAGGGTTTTGTGCTGCTCGCTGTCGTCCTTCTATGGACCAGATTTT
TGGGCTTTACACAGACGACGGTGAAAAGATCAGAGGCCAAGGAATCCCGCGAGTCAAGCTTAATGGGAGAAGGATGGAAACTCAATTCAGACGCAGCCTGGTTCGAGAAA
GAAGGATGCGGTGGTCTCGGATGGCTCGTGCATGACTCGGAGGGTTCCCTGATCTGTTTCGGAATGAAGCAAGTTAATCAAAAATGGGCTATCAAGAATTTGGAAGCTTG
CGCTATGCTAGAAGGTATCAAGGAAGTTTCAGATACCTGTAATCGCCTCGGTATTCGCCTGGAAGTCGAGACAGATGCTATTGAGGTCGTTAAGGCCATCAACCGCGAGT
CGGAAGATTTGTCCGACCTGAAGATCTTCACTGATGAAATCAAGGCTCTTGCTACCCGAGCCTTCTCCATGAACTTTAGCTATTGTAATCGTTTTTTGAATACAGCCGCG
CACTGTGTTGCGAGAAGCGCTGCCGGCAGGTCCTTGTCTTCTCCGGCGAAGTCTCCTGGCCAGTCGTCTTCTTCGCGGGAAAGGGAGGATTGTTTTTGGGCTCCCAATAT
TCCGATTTGGGCTTTCCCTCTCATTAATGGGGGTGGTTGTACTGGTCATTACTGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCTGTGGCTGTGGTGGTGGTGGTTGCGATTGTTGTGGTTGATCTTGATTTTGCGAGAGCCTCCGCACCACCGACGAGGCTCCCCGTGGAGGAGCGGGCTTCGAC
ACACAGCTTCCTATCTTGGCTAATTATGAGTGTGAAAAACTACAGTAGATGGAAATCCAAATCCAAGGGTTTTGTGCTGCTCGCTGTCGTCCTTCTATGGACCAGATTTT
TGGGCTTTACACAGACGACGGTGAAAAGATCAGAGGCCAAGGAATCCCGCGAGTCAAGCTTAATGGGAGAAGGATGGAAACTCAATTCAGACGCAGCCTGGTTCGAGAAA
GAAGGATGCGGTGGTCTCGGATGGCTCGTGCATGACTCGGAGGGTTCCCTGATCTGTTTCGGAATGAAGCAAGTTAATCAAAAATGGGCTATCAAGAATTTGGAAGCTTG
CGCTATGCTAGAAGGTATCAAGGAAGTTTCAGATACCTGTAATCGCCTCGGTATTCGCCTGGAAGTCGAGACAGATGCTATTGAGGTCGTTAAGGCCATCAACCGCGAGT
CGGAAGATTTGTCCGACCTGAAGATCTTCACTGATGAAATCAAGGCTCTTGCTACCCGAGCCTTCTCCATGAACTTTAGCTATTGTAATCGTTTTTTGAATACAGCCGCG
CACTGTGTTGCGAGAAGCGCTGCCGGCAGGTCCTTGTCTTCTCCGGCGAAGTCTCCTGGCCAGTCGTCTTCTTCGCGGGAAAGGGAGGATTGTTTTTGGGCTCCCAATAT
TCCGATTTGGGCTTTCCCTCTCATTAATGGGGGTGGTTGTACTGGTCATTACTGTTTTTAA
Protein sequenceShow/hide protein sequence
MPPVAVVVVVAIVVVDLDFARASAPPTRLPVEERASTHSFLSWLIMSVKNYSRWKSKSKGFVLLAVVLLWTRFLGFTQTTVKRSEAKESRESSLMGEGWKLNSDAAWFEK
EGCGGLGWLVHDSEGSLICFGMKQVNQKWAIKNLEACAMLEGIKEVSDTCNRLGIRLEVETDAIEVVKAINRESEDLSDLKIFTDEIKALATRAFSMNFSYCNRFLNTAA
HCVARSAAGRSLSSPAKSPGQSSSSREREDCFWAPNIPIWAFPLINGGGCTGHYCF