CuGenDBv2

Gene ID	Spg019787
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H2 subunit C isoform X2
Genome location	scaffold5:36685992..36691658
RNA-Seq Expression	Spg019787
Synteny	Spg019787
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0032299 - ribonuclease H2 complex (cellular component)
InterPro domains	IPR005162 - Retrotransposon gag domain IPR013924 - Ribonuclease H2, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583796.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-30

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKS GKRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

KAG7019419.1 Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-30

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKS GKRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

XP_022927160.1 uncharacterized protein C12B10.15c [Cucurbita moschata]

3.6e-30

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKS GKRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

XP_023001622.1 uncharacterized protein C12B10.15c [Cucurbita maxima]

1.2e-30

86.25

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKSL KRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA ASTALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

XP_038893586.1 uncharacterized protein C12B10.15c [Benincasa hispida]

1.0e-32

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YVLG+KSLGKRKASEQ ++SSPWQVKAKF NITYWNH TLPSQDDTF+RSFHWLTVAQALH+PVTAEDLASASTALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C9A8 uncharacterized protein C12B10.15c

6.6e-30

82.5

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YVLG+KSLGK K+S+Q  DSSPWQVKAKF NITYWNH TLPSQDDTF+R+FHWLTVAQALH+PVTAEDLASAS AL N+S
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

A0A5A7TIT8 Ribonuclease H2 subunit C isoform X2

6.6e-30

82.5

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YVLG+KSLGK K+S+Q  DSSPWQVKAKF NITYWNH TLPSQDDTF+R+FHWLTVAQALH+PVTAEDLASAS AL N+S
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

A0A6J1CLH6 ribonuclease H2 subunit C

5.0e-30

87.5

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        +VLGRK LGKRKASEQS+DS  W+VKAKFGNITYWNH TLPSQDD FRRSFHWLTVAQALHQPVTAEDLASASTA K+MS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

A0A6J1EN41 uncharacterized protein C12B10.15c

1.7e-30

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKS GKRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA+AS ALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

A0A6J1KH29 uncharacterized protein C12B10.15c

5.9e-31

86.25

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Query:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS
        YV+GRKSL KRKASE+S+DSS WQVKAKF NITYWNH TLP+QDDTF+RSFHWLTVAQALH+PVTAEDLA ASTALKNMS
Subjt:  YVLGRKSLGKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G39440.1 CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

9.4e-21

61.43

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Query:  GKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKN
        GKRKAS  ++D+  W+VKAKF N+TYWNH +LPS+DDTF RSFHW ++A+ALH+PV  EDL + S   KN
Subjt:  GKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKN

Sequences

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CDS sequence

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ATGAATAGTTGGGGCGAGTTTCGTAGGCTATTGTTGGAAAGATTTCGACCATTGTCACAAGGGGATCGATATGCACGGTTAATGAAGCTTCAACAAGAATCCACCGTGAG
AGATTACCGCTGGCGGTTTGAACAGTATGCGGCAACCCTTAAAGATGTCTATGACGGCGTTCTGGAAAGCAAGTTTGAATTTGGGTTGAAGGAAGAAATTCAAAGGCAGC
GTCTCGACGCTAGGGACAACGTCTTGACGCTGTCCTGTTGTCGCCTCAAACATATTAGGAAATTGATAGAGCGTCGAGATGCTCGCTATGTGTTGGGTAGGAAAAGTCTT
GGCAAGAGAAAAGCTTCTGAACAGTCCAAGGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGGAAACATTACATATTGGAACCATGGCACTCTGCCTTCACAAGATGA
TACGTTTCGGCGTTCTTTTCACTGGCTTACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAGGACTTAGCATCTGCATCTACTGCTCTCAAGAACATGAGTTGA

mRNA sequence

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Protein sequence

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MNSWGEFRRLLLERFRPLSQGDRYARLMKLQQESTVRDYRWRFEQYAATLKDVYDGVLESKFEFGLKEEIQRQRLDARDNVLTLSCCRLKHIRKLIERRDARYVLGRKSL
GKRKASEQSKDSSPWQVKAKFGNITYWNHGTLPSQDDTFRRSFHWLTVAQALHQPVTAEDLASASTALKNMS

Spg019787 (gene) of Sponge gourd (cylindrica) v1 genome