CuGenDBv2

Gene ID	Spg019790
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RPOL4c domain-containing protein
Genome location	scaffold5:35640470..35640870
RNA-Seq Expression	Spg019790
Synteny	Spg019790
Gene Ontology terms	GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0031990 - mRNA export from nucleus in response to heat stress (biological process) GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process) GO:0045948 - positive regulation of translational initiation (biological process) GO:0000932 - P-body (cellular component) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	IPR005574 - RNA polymerase subunit RPB4/RPC9 IPR006590 - RNA polymerase Rpb4/RPC9, core IPR010997 - HRDC-like superfamily IPR038324 - Rpb4/RPC9 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AFK39331.1 unknown [Lotus japonicus]

4.1e-26

94.03

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLK KCLMNCEVSLILEHKYEQLQQ S+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP N
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

ESQ40929.1 hypothetical protein EUTSA_v10014976mg [Eutrema salsugineum]

1.4e-26

96.97

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
        EFLK KCLMNCEVSLILEHKYEQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL

KAD7478443.1 hypothetical protein E3N88_01579 [Mikania micrantha]

3.2e-26

96.92

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLK KCLMNCEVSLIL+HKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

KCW54360.1 hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis]

3.2e-26

96.92

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLK KCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

PPR92416.1 hypothetical protein GOBAR_AA28255 [Gossypium barbadense]

4.9e-27

95.52

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLK KCLMNCEV+LILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

TrEMBL top hits

e value

%identity

Alignment

A0A059ALU0 RPOL4c domain-containing protein

1.5e-26

96.92

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLK KCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

A0A2P2JFE6 RPOL4c domain-containing protein

1.5e-26

96.92

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLK KCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

A0A2P5WMU4 RPOL4c domain-containing protein

2.4e-27

95.52

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLK KCLMNCEV+LILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

A0A5N6Q1Z2 RPOL4c domain-containing protein

1.5e-26

96.92

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLK KCLMNCEVSLIL+HKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

V4LB78 RPOL4c domain-containing protein

6.9e-27

96.97

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
        EFLK KCLMNCEVSLILEHKYEQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL

SwissProt top hits

e value

%identity

Alignment

O15514 DNA-directed RNA polymerase II subunit RPB4

9.3e-05

38.71

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR
        EF   + L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y  RFSR+KN + +  VR
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR

O48890 DNA-directed RNA polymerase II subunit 4

6.6e-27

95.24

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
        EFLK KCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE

Q9D7M8 DNA-directed RNA polymerase II subunit RPB4

9.3e-05

38.71

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR
        EF   + L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y  RFSR+KN + +  VR
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR

Arabidopsis top hits

e value

%identity

Alignment

AT5G09920.1 RNA polymerase II, Rpb4, core protein

4.7e-28

95.24

Show/hide

Query:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
        EFLK KCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
Subjt:  EFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AAAACATCAAAGGTGACAACAGACATTTATTTCCTTTGGCTGCTTGCAGAGTTCTTAAAGGTCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACACAAATA
TGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGTTTCAGCCGCTATAAAAATCCTGACGCTG
TTAGACAAGTACGAGAGTATCCCTTAAACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

KTSKVTTDIYFLWLLAEFLKVKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

Spg019790 (gene) of Sponge gourd (cylindrica) v1 genome