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Spg019810 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019810
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:31785645..31786064
RNA-Seq ExpressionSpg019810
SyntenySpg019810
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3466751.1 reverse transcriptase [Gossypium australe]1.5e-0437.21Show/hide
Query:  IAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL
        ++E ++C    RAS+  L++    I++E D+LS+IK  NK+D + S+++  + +I+ L++ F + SF F PRS N  AH+LA   L
Subjt:  IAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL

KAA3477308.1 reverse transcriptase [Gossypium australe]8.8e-0535.16Show/hide
Query:  LEMRAIAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL
        ++   +AE ++C    RAS+  L++    +++E D+LS+IK  NK+D + S+++  + +I  L++ F + SF F PRS N  AH+LA   L
Subjt:  LEMRAIAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL

MBA0841494.1 hypothetical protein [Gossypium armourianum]4.4e-0435.87Show/hide
Query:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLGVGAGSIL
        IAE ++C  +I+     +    I++ESD+LS+I+   KK+ + S ++  +++I QLR    E SF F PRS N  AH +A+  L    G  L
Subjt:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLGVGAGSIL

XP_015383853.1 uncharacterized protein LOC107176237 [Citrus sinensis]2.6e-0445.76Show/hide
Query:  IVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLAR
        I+VESD   V+KL+N K+ + +E+ +++ EI+ L   F  FS    PRS N HAHSLA+
Subjt:  IVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLAR

XP_015384866.1 uncharacterized protein LOC107176592 [Citrus sinensis]7.5e-0442.37Show/hide
Query:  IVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLAR
        ++VE+D   V KL+N ++ + +EI +++ EI+  R  F   SF + PRS N HAHSLA+
Subjt:  IVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLAR

TrEMBL top hitse value%identityAlignment
A0A5B6VCL1 Reverse transcriptase7.3e-0537.21Show/hide
Query:  IAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL
        ++E ++C    RAS+  L++    I++E D+LS+IK  NK+D + S+++  + +I+ L++ F + SF F PRS N  AH+LA   L
Subjt:  IAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL

A0A5B6W814 Reverse transcriptase4.3e-0535.16Show/hide
Query:  LEMRAIAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL
        ++   +AE ++C    RAS+  L++    +++E D+LS+IK  NK+D + S+++  + +I  L++ F + SF F PRS N  AH+LA   L
Subjt:  LEMRAIAEGLSCLPSIRASRPDLHV--PPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFL

A0A5C7ITL2 RNase H domain-containing protein4.7e-0438.82Show/hide
Query:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLG
        +AE L+ L   R +  +L + P V+ESDALSV++ +  K   LSE+  ++ +I ++ +SF  FS  F PR  N+  H LAR  +G
Subjt:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLG

A0A7J8UY98 Uncharacterized protein4.7e-0436.71Show/hide
Query:  AEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLA
        AE ++C  + +  R D+    I++E DALS+IK    K  + S I   + +I QL  +FG + F + PR  N  AH LA
Subjt:  AEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLA

A0A7J9K4Z7 RNase H domain-containing protein (Fragment)2.1e-0435.87Show/hide
Query:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLGVGAGSIL
        IAE ++C  +I+     +    I++ESD+LS+I+   KK+ + S ++  +++I QLR    E SF F PRS N  AH +A+  L    G  L
Subjt:  IAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLGVGAGSIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAGATGAGGGCGATTGCAGAAGGGTTGAGTTGCTTACCGTCAATCAGAGCCTCCCGCCCGGATTTGCATGTCCCTCCCATTGTTGTTGAATCAGACGCTCTTAG
CGTGATTAAGCTACTGAACAAGAAGGATGAAAACCTGTCTGAAATCACCTTCTTGGTTGATGAGATCGAGCAGCTGAGGAGTTCTTTTGGGGAATTTTCTTTCTCCTTTT
GCCCGCGTTCGAGAAACGAGCATGCGCATTCTTTGGCGCGCAGTTTTTTGGGTGTTGGGGCTGGTTCTATTTTACCTTTTCTGGGGCCCTCTTCCATTTCGGAAGATTGT
ATTGATGCACAATTTATTTTTTTGGGTCGGGTCCTACTCGACTTTCTCCTTATTCTAAGGGAGGCTGATGTTTCCTGTTTGCTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAGATGAGGGCGATTGCAGAAGGGTTGAGTTGCTTACCGTCAATCAGAGCCTCCCGCCCGGATTTGCATGTCCCTCCCATTGTTGTTGAATCAGACGCTCTTAG
CGTGATTAAGCTACTGAACAAGAAGGATGAAAACCTGTCTGAAATCACCTTCTTGGTTGATGAGATCGAGCAGCTGAGGAGTTCTTTTGGGGAATTTTCTTTCTCCTTTT
GCCCGCGTTCGAGAAACGAGCATGCGCATTCTTTGGCGCGCAGTTTTTTGGGTGTTGGGGCTGGTTCTATTTTACCTTTTCTGGGGCCCTCTTCCATTTCGGAAGATTGT
ATTGATGCACAATTTATTTTTTTGGGTCGGGTCCTACTCGACTTTCTCCTTATTCTAAGGGAGGCTGATGTTTCCTGTTTGCTTGGTTAA
Protein sequenceShow/hide protein sequence
MLEMRAIAEGLSCLPSIRASRPDLHVPPIVVESDALSVIKLLNKKDENLSEITFLVDEIEQLRSSFGEFSFSFCPRSRNEHAHSLARSFLGVGAGSILPFLGPSSISEDC
IDAQFIFLGRVLLDFLLILREADVSCLLG