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Spg019893 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019893
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGRF-type domain-containing protein
Genome locationscaffold5:34418308..34419613
RNA-Seq ExpressionSpg019893
SyntenySpg019893
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823597.1 unnamed protein product [Ananas comosus var. bracteatus]6.4e-1260Show/hide
Query:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK
        C+CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE I +L +++GRLKK
Subjt:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK

KAG6468846.1 hypothetical protein ZIOFF_073539 [Zingiber officinale]2.4e-1152.11Show/hide
Query:  YCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRR
        YCGL+A L TSWT  NPGRRF+ CS Y+    GCGFF W DPE+ E SK +IN+L+    +LK    +L++
Subjt:  YCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRR

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]5.4e-1152.78Show/hide
Query:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVIN-------KLRDEVGRLKK
        C+CGL+A L TSWT  NPGRRF+ C  Y+    GCGFF W DPE+ E SK +IN       KL+ E+  LKK
Subjt:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVIN-------KLRDEVGRLKK

KAG6527582.1 hypothetical protein ZIOFF_009697 [Zingiber officinale]3.2e-1151.39Show/hide
Query:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRR
        CYCGL+A L TSWT  NP RRF+ C  Y+    GCGFF W DPEV E SK +IN+L+    +LK    +L++
Subjt:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRR

PQM41700.1 uncharacterized protein Pyn_25206 [Prunus yedoensis var. nudiflora]9.2e-1151.95Show/hide
Query:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE
        P  C+CG Q RL TSWT+ NPGRRF+GC+ Y G   GC FF W DP+V E SK VI  L   + RL+K  ++ R+L+
Subjt:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE

TrEMBL top hitse value%identityAlignment
A0A314UW97 GRF-type domain-containing protein4.5e-1151.95Show/hide
Query:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE
        P  C+CG Q RL TSWT+ NPGRRF+GC+ Y G   GC FF W DP+V E SK VI  L   + RL+K  ++ R+L+
Subjt:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE

A0A445ILI1 GRF-type domain-containing protein5.8e-1139.6Show/hide
Query:  ITMDNFDGSLESVRVDGGG-----------TKNPTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGS-GCGFFYWCDPEVKEHSKEVINKLRDEVGRL
        + ++NF  S  SV +  G             ++  +C C ++A L+TSWT  NPGRRFYGC  YK  G+ GC FF W DP      K++I  L  EV  L
Subjt:  ITMDNFDGSLESVRVDGGG-----------TKNPTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGS-GCGFFYWCDPEVKEHSKEVINKLRDEVGRL

Query:  K
        K
Subjt:  K

A0A6P5U364 uncharacterized protein LOC1107735324.5e-1151.95Show/hide
Query:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE
        P  C+CG Q RL TSWT+ NPGRRF+GC+ Y G   GC FF W DP+V E SK VI  L   + RL+K  ++ R+L+
Subjt:  PTYCYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLE

A0A6V7NYI1 GRF-type domain-containing protein3.1e-1260Show/hide
Query:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK
        C+CGL+A   TS T  NPGRRFYGC  YK N  GCGFF W DPE+ E  KE I +L +++GRLKK
Subjt:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK

A0A6V7P503 GRF-type domain-containing protein4.5e-1158.46Show/hide
Query:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK
        C+CGL+A   TS T  N GRRFYGC  YK N  GCGFF W DPE+ E  KE I +L +++GRLKK
Subjt:  CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42860.1 zinc knuckle (CCHC-type) family protein1.1e-0658.14Show/hide
Query:  CYCGLQARLI-TSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCD
        C CG+   LI TS T +NPGR+FY C   + NG GCGFF WCD
Subjt:  CYCGLQARLI-TSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTGCACAGGGACTTTCGTTGCTCATTACACAGTACTTACAAAAAATATGATTCTCCAGCCGAAGCACGAAAAAATCGAGACAAACGAGTTGCACGAGATTCAGATTGG
AACCGTTTATGTGATCAATGAGAAAAAAAAAGAATTTAAGCATCGGTCTAAGTCAAATTCTAAGGCTCGAGCCGCTCTTCCTTTCATTCATAGAGGTGGCACTGCGACAT
TTCTACGCCATAAGCAGAAAAAGAAAGTTCCGAAAATTACAATGGACAACTTTGATGGAAGTTTAGAGTCCGTAAGAGTCGATGGCGGTGGAACTAAGAACCCTACGTAC
TGTTACTGTGGGTTACAAGCTCGATTAATTACTTCATGGACGAACAGGAATCCTGGACGAAGGTTTTATGGATGTTCAGGTTACAAGGGGAATGGCTCGGGTTGTGGGTT
TTTTTATTGGTGTGATCCAGAAGTAAAAGAACACAGTAAAGAAGTGATTAACAAACTAAGAGATGAAGTTGGTCGATTGAAGAAGATTGCACAAAAATTGCGCCGATTGG
AGTGGTTGTATCGTGTAATAATTGTAGTAATGGGAACTATTGTGTATTTGGGTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
CATTGCACAGGGACTTTCGTTGCTCATTACACAGTACTTACAAAAAATATGATTCTCCAGCCGAAGCACGAAAAAATCGAGACAAACGAGTTGCACGAGATTCAGATTGG
AACCGTTTATGTGATCAATGAGAAAAAAAAAGAATTTAAGCATCGGTCTAAGTCAAATTCTAAGGCTCGAGCCGCTCTTCCTTTCATTCATAGAGGTGGCACTGCGACAT
TTCTACGCCATAAGCAGAAAAAGAAAGTTCCGAAAATTACAATGGACAACTTTGATGGAAGTTTAGAGTCCGTAAGAGTCGATGGCGGTGGAACTAAGAACCCTACGTAC
TGTTACTGTGGGTTACAAGCTCGATTAATTACTTCATGGACGAACAGGAATCCTGGACGAAGGTTTTATGGATGTTCAGGTTACAAGGGGAATGGCTCGGGTTGTGGGTT
TTTTTATTGGTGTGATCCAGAAGTAAAAGAACACAGTAAAGAAGTGATTAACAAACTAAGAGATGAAGTTGGTCGATTGAAGAAGATTGCACAAAAATTGCGCCGATTGG
AGTGGTTGTATCGTGTAATAATTGTAGTAATGGGAACTATTGTGTATTTGGGTTTTGATTAG
Protein sequenceShow/hide protein sequence
HCTGTFVAHYTVLTKNMILQPKHEKIETNELHEIQIGTVYVINEKKKEFKHRSKSNSKARAALPFIHRGGTATFLRHKQKKKVPKITMDNFDGSLESVRVDGGGTKNPTY
CYCGLQARLITSWTNRNPGRRFYGCSGYKGNGSGCGFFYWCDPEVKEHSKEVINKLRDEVGRLKKIAQKLRRLEWLYRVIIVVMGTIVYLGFD