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Spg019894 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019894
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:33254265..33258702
RNA-Seq ExpressionSpg019894
SyntenySpg019894
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.3e-1545.83Show/hide
Query:  IASTKRPRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRAKLVG
        + + + PRGNR SLQTGELDKT                 VEIELP+ DTLP SAESS +    + I               + EDDV WLH +FR K  G
Subjt:  IASTKRPRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRAKLVG

Query:  GPGGGVTTWYQSQVSPWEKR
        GPGGGVTTWYQ  + P   R
Subjt:  GPGGGVTTWYQSQVSPWEKR

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.6e-1553.47Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG
        PRGNR SLQTGELDKT                 VEIELPMPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG

Query:  V
        V
Subjt:  V

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.9e-1547.58Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V IELP+PD LPTSAESS                 + F S     M  + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLVGGPGGGVTTWYQS
        WLHA+FRAK VGGPGGGVTTW  S
Subjt:  WLHAIFRAKLVGGPGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.0e-1749.19Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELP+PDTLPTSAESS                 + F S     M  + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLVGGPGGGVTTWYQS
        WLHA+FRAK VGGPGGGVTTW  S
Subjt:  WLHAIFRAKLVGGPGGGVTTWYQS

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.6e-1553.47Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG
        PRGNR SLQTGELDKT                 VEIELPMPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.2e-1553.47Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG
        PRGNR SLQTGELDKT                 VEIELPMPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG

Query:  V
        V
Subjt:  V

A0A5A7UT17 CCHC-type domain-containing protein1.9e-1547.58Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V IELP+PD LPTSAESS                 + F S     M  + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLVGGPGGGVTTWYQS
        WLHA+FRAK VGGPGGGVTTW  S
Subjt:  WLHAIFRAKLVGGPGGGVTTWYQS

A0A5D3BSA6 Retrotrans_gag domain-containing protein6.4e-1645.83Show/hide
Query:  IASTKRPRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRAKLVG
        + + + PRGNR SLQTGELDKT                 VEIELP+ DTLP SAESS +    + I               + EDDV WLH +FR K  G
Subjt:  IASTKRPRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFRAKLVG

Query:  GPGGGVTTWYQSQVSPWEKR
        GPGGGVTTWYQ  + P   R
Subjt:  GPGGGVTTWYQSQVSPWEKR

A0A5D3CJX3 CCHC-type domain-containing protein3.4e-1749.19Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR
        PRGNR SLQTGELDKTV                IELP+PDTLPTSAESS                 + F S     M  + + FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPMPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLVGGPGGGVTTWYQS
        WLHA+FRAK VGGPGGGVTTW  S
Subjt:  WLHAIFRAKLVGGPGGGVTTWYQS

A0A5D3D150 Reverse transcriptase3.2e-1553.47Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG
        PRGNR SLQTGELDKT                 VEIELPMPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPMPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFRAKLVGGPGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTACATCCACTTTCTTAAAGGGGGTAGGGCAACTGATCTTATTCCAAAGAAGCAATCGACTGAAAATTTACAGCATGAAGGAGATAGAACTCCTTTTCTCACAGA
AAACCTCACTTCCCTTTCTTTACCCAAATCTCACGAATACTCGGACTCTCCTCAGCTTCACTCTGCCCTAATTGCAAGCACAAAAAGGCCAAGAGGAAATAGGTCGAGTC
TACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAATGTTTTATATCTATGATTAGT
ATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGG
GGGTGTGACAACTTGGTATCAGAGCCAGGTTTCTCCATGGGAAAAGAGACATGGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTACATCCACTTTCTTAAAGGGGGTAGGGCAACTGATCTTATTCCAAAGAAGCAATCGACTGAAAATTTACAGCATGAAGGAGATAGAACTCCTTTTCTCACAGA
AAACCTCACTTCCCTTTCTTTACCCAAATCTCACGAATACTCGGACTCTCCTCAGCTTCACTCTGCCCTAATTGCAAGCACAAAAAGGCCAAGAGGAAATAGGTCGAGTC
TACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAATGTTTTATATCTATGATTAGT
ATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGTAGGTGGTCCGGGAGG
GGGTGTGACAACTTGGTATCAGAGCCAGGTTTCTCCATGGGAAAAGAGACATGGTAGTTAG
Protein sequenceShow/hide protein sequence
MVYIHFLKGGRATDLIPKKQSTENLQHEGDRTPFLTENLTSLSLPKSHEYSDSPQLHSALIASTKRPRGNRSSLQTGELDKTVEIELPMPDTLPTSAESSRTKCFISMIS
MFIRFNVQEGQRVSLEEDDVRWLHAIFRAKLVGGPGGGVTTWYQSQVSPWEKRHGS