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Spg019912 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019912
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:28800827..28803657
RNA-Seq ExpressionSpg019912
SyntenySpg019912
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4268866.1 unnamed protein product [Prunus armeniaca]3.0e-0443.55Show/hide
Query:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWM
        L+R +K+  D SL ++    KYE++ D C  CGRIGH  KEC F  A +  +  +P YGSW+
Subjt:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWM

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.3e-0741.79Show/hide
Query:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYGSWMSFTG
        L+R IK+++D  +G  W PI+YE++ D C +CG IGH + +C+  +LA+   S    EYG W+ F G
Subjt:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYGSWMSFTG

XP_023905689.1 uncharacterized protein LOC112017470 [Quercus suber]1.4e-0439.39Show/hide
Query:  QKLQRCIKVSLDESLGSI-WTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWM
        Q L RC K+ L E  GS+ W P+KYE++  IC +CG + HE K+C  ++ S G+ +  + ++G W+
Subjt:  QKLQRCIKVSLDESLGSI-WTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWM

XP_030959413.1 uncharacterized protein At4g02000-like [Quercus lobata]2.7e-0542.42Show/hide
Query:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSR-QPEYGSWMSFT
        L R  ++ LDE +   W   KYEK+ + C +CG + H+ KEC  +LA  GSSS  + EYG+W+  T
Subjt:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSR-QPEYGSWMSFT

XP_030969817.1 uncharacterized protein LOC115990093 [Quercus lobata]2.3e-0434.91Show/hide
Query:  IWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMS----FTGRSSNLFRSPSNSPIGSNRSMMDNLR--LEASQRSSPKTGSGSKP
        +W   KYEKM + C +CG + H+ KEC  +L+S GS S  Q EYGSW+       G+ S +F   +    G   + +   R   E  Q ++P   +G+  
Subjt:  IWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMS----FTGRSSNLFRSPSNSPIGSNRSMMDNLR--LEASQRSSPKTGSGSKP

Query:  TDISSS
         DI+SS
Subjt:  TDISSS

TrEMBL top hitse value%identityAlignment
A0A2N9EV43 Reverse transcriptase domain-containing protein5.0e-0543.04Show/hide
Query:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSPS
        Q L R  KV L    G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  YG+WM   G S  + R PS
Subjt:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSPS

A0A2N9EVP1 Reverse transcriptase domain-containing protein5.0e-0542.31Show/hide
Query:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSP
        Q L R  KV L   +G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  YG+WM   G S  + R P
Subjt:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSP

A0A2N9HN71 Reverse transcriptase domain-containing protein5.0e-0543.04Show/hide
Query:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSPS
        Q L R  KV L    G  W   +YE++ + C +CGRI H  K+C  +L S GS SS Q  YG+WM   G S  + R PS
Subjt:  QKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGS-SSRQPEYGSWMSFTGRSSNLFRSPS

A0A6J1DU55 uncharacterized protein LOC1110231356.4e-0841.79Show/hide
Query:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYGSWMSFTG
        L+R IK+++D  +G  W PI+YE++ D C +CG IGH + +C+  +LA+   S    EYG W+ F G
Subjt:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNF-FLASDGSSSRQPEYGSWMSFTG

A0A6J5TXP7 CCHC-type domain-containing protein1.5e-0443.55Show/hide
Query:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWM
        L+R +K+  D SL ++    KYE++ D C  CGRIGH  KEC F  A +  +  +P YGSW+
Subjt:  LQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCAACGACTGAAAACGCAGCAACTCCCTCTTGATTTCTTTGCTGGAAATTTCTTCTTCAAAGACACAATAACCACAGAGGTTACACCGCTACCAGTGGGACCTAA
TGGACCTGCAGATCAGAAGCTCCAACGATGTATCAAGGTAAGTTTAGATGAGTCGTTGGGCAGTATCTGGACTCCTATCAAATATGAGAAGATGCTGGATATTTGTAACT
ACTGTGGTCGTATTGGTCACGAGACGAAGGAGTGTAATTTTTTCTTAGCAAGTGATGGTTCCTCGTCTCGACAACCAGAATATGGTTCATGGATGTCTTTTACAGGACGT
TCCTCAAACTTGTTCAGATCTCCGTCGAACAGCCCCATAGGAAGCAATCGATCGATGATGGATAATCTCAGGTTGGAGGCCTCTCAGCGTTCGTCCCCGAAAACAGGCTC
CGGTAGCAAACCCACGGATATCTCGTCGTCGGTGGAGGAGACGGTCGCTGCTCCGATCATGGAAGGGGCTCAACCAATTAATGCTCTTCATGTGGGCTTTAATGGCATTG
ATTACTCAAAGGTCAAGAAAAAATTAGAGTATGGAAAAGAAACCAAAATTCAAGTGGCTGAAGGTAACGAAATTTTCGTCTTCAAAGCGGAAGGAAGGGATCAGAAACCG
TCGATTTTTTCGCATTCTCTATCTTCAAGCAAAGATTTGGTTGAAGGAATACCGGTTCAGCCAACTGGGGTTTATTCTCTGTCCAACCCATCGGTTGGTTTGTCATGCAG
CGTGGACCGAACAGGTTTTCATACAGACGCACAGAAAAATGAAGATTGGGCTTCATTGCTATCAAAATCGAACACTGAGATGGGAGAGAAGACAGTGACGGCTTCATACT
TGTCGAAGATAGGGCCAAAGCCTGTGAGTTGGAAACGCAGGGCCCCTAAAATGTCGTCTGATCTCAATGGAAGTGGCAATGCAGATAGTCAGAAGAAGCGAATGGGTGAG
GGGCTAGCTGGAGTCTCTTTGAAGTGTGCGCGTGCTGAGGAAGATGACACTACAATCTCAACTGAACCATCGGTGGAGGCTGCTGAGCAGCCCCGCCGAGAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCAACGACTGAAAACGCAGCAACTCCCTCTTGATTTCTTTGCTGGAAATTTCTTCTTCAAAGACACAATAACCACAGAGGTTACACCGCTACCAGTGGGACCTAA
TGGACCTGCAGATCAGAAGCTCCAACGATGTATCAAGGTAAGTTTAGATGAGTCGTTGGGCAGTATCTGGACTCCTATCAAATATGAGAAGATGCTGGATATTTGTAACT
ACTGTGGTCGTATTGGTCACGAGACGAAGGAGTGTAATTTTTTCTTAGCAAGTGATGGTTCCTCGTCTCGACAACCAGAATATGGTTCATGGATGTCTTTTACAGGACGT
TCCTCAAACTTGTTCAGATCTCCGTCGAACAGCCCCATAGGAAGCAATCGATCGATGATGGATAATCTCAGGTTGGAGGCCTCTCAGCGTTCGTCCCCGAAAACAGGCTC
CGGTAGCAAACCCACGGATATCTCGTCGTCGGTGGAGGAGACGGTCGCTGCTCCGATCATGGAAGGGGCTCAACCAATTAATGCTCTTCATGTGGGCTTTAATGGCATTG
ATTACTCAAAGGTCAAGAAAAAATTAGAGTATGGAAAAGAAACCAAAATTCAAGTGGCTGAAGGTAACGAAATTTTCGTCTTCAAAGCGGAAGGAAGGGATCAGAAACCG
TCGATTTTTTCGCATTCTCTATCTTCAAGCAAAGATTTGGTTGAAGGAATACCGGTTCAGCCAACTGGGGTTTATTCTCTGTCCAACCCATCGGTTGGTTTGTCATGCAG
CGTGGACCGAACAGGTTTTCATACAGACGCACAGAAAAATGAAGATTGGGCTTCATTGCTATCAAAATCGAACACTGAGATGGGAGAGAAGACAGTGACGGCTTCATACT
TGTCGAAGATAGGGCCAAAGCCTGTGAGTTGGAAACGCAGGGCCCCTAAAATGTCGTCTGATCTCAATGGAAGTGGCAATGCAGATAGTCAGAAGAAGCGAATGGGTGAG
GGGCTAGCTGGAGTCTCTTTGAAGTGTGCGCGTGCTGAGGAAGATGACACTACAATCTCAACTGAACCATCGGTGGAGGCTGCTGAGCAGCCCCGCCGAGAGCCATGA
Protein sequenceShow/hide protein sequence
MLQRLKTQQLPLDFFAGNFFFKDTITTEVTPLPVGPNGPADQKLQRCIKVSLDESLGSIWTPIKYEKMLDICNYCGRIGHETKECNFFLASDGSSSRQPEYGSWMSFTGR
SSNLFRSPSNSPIGSNRSMMDNLRLEASQRSSPKTGSGSKPTDISSSVEETVAAPIMEGAQPINALHVGFNGIDYSKVKKKLEYGKETKIQVAEGNEIFVFKAEGRDQKP
SIFSHSLSSSKDLVEGIPVQPTGVYSLSNPSVGLSCSVDRTGFHTDAQKNEDWASLLSKSNTEMGEKTVTASYLSKIGPKPVSWKRRAPKMSSDLNGSGNADSQKKRMGE
GLAGVSLKCARAEEDDTTISTEPSVEAAEQPRREP