CuGenDBv2

Gene ID	Spg019918
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RPOL4c domain-containing protein
Genome location	scaffold5:35560358..35564637
RNA-Seq Expression	Spg019918
Synteny	Spg019918
Gene Ontology terms	GO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0031990 - mRNA export from nucleus in response to heat stress (biological process) GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process) GO:0045948 - positive regulation of translational initiation (biological process) GO:0000932 - P-body (cellular component) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	IPR005574 - RNA polymerase subunit RPB4/RPC9 IPR006590 - RNA polymerase Rpb4/RPC9, core IPR010997 - HRDC-like superfamily IPR038324 - Rpb4/RPC9 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AFK39331.1 unknown [Lotus japonicus]

2.6e-26

95.52

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLKAKCLMNCEVSLILEHKYEQLQQ S+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP N
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

ESQ40929.1 hypothetical protein EUTSA_v10014976mg [Eutrema salsugineum]

8.8e-27

98.48

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
        EFLKAKCLMNCEVSLILEHKYEQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL

KAD7478443.1 hypothetical protein E3N88_01579 [Mikania micrantha]

2.0e-26

98.46

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLKAKCLMNCEVSLIL+HKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

KCW54360.1 hypothetical protein EUGRSUZ_I00318 [Eucalyptus grandis]

2.0e-26

98.46

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLKAKCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

PPR92416.1 hypothetical protein GOBAR_AA28255 [Gossypium barbadense]

3.0e-27

97.01

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLKAKCLMNCEV+LILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

TrEMBL top hits

e value

%identity

Alignment

A0A059ALU0 RPOL4c domain-containing protein

9.5e-27

98.46

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLKAKCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

A0A2P2JFE6 RPOL4c domain-containing protein

9.5e-27

98.46

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLKAKCLMNCEVSLILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

A0A2P5WMU4 RPOL4c domain-containing protein

1.5e-27

97.01

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
        EFLKAKCLMNCEV+LILEHKYEQLQQMS+DPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

A0A5N6Q1Z2 RPOL4c domain-containing protein

9.5e-27

98.46

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
        EFLKAKCLMNCEVSLIL+HKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYP

V4LB78 RPOL4c domain-containing protein

4.3e-27

98.48

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
        EFLKAKCLMNCEVSLILEHKYEQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPL

SwissProt top hits

e value

%identity

Alignment

O15514 DNA-directed RNA polymerase II subunit RPB4

5.8e-05

40.32

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR
        EF  A+ L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y  RFSR+KN + +  VR
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR

O48890 DNA-directed RNA polymerase II subunit 4

4.1e-27

96.83

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
        EFLKAKCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE

Q9D7M8 DNA-directed RNA polymerase II subunit RPB4

5.8e-05

40.32

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR
        EF  A+ L+N EV ++LEH+ +Q +   ++   ++S+VF K+L Y  RFSR+KN + +  VR
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVR

Arabidopsis top hits

e value

%identity

Alignment

AT5G09920.1 RNA polymerase II, Rpb4, core protein

2.9e-28

96.83

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Query:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
        EFLKAKCLMNCEVSLILEHK+EQLQQ+SEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE
Subjt:  EFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVRE

Sequences

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CDS sequence

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GCAACTAGTCGTGCGGCTGCGACAAAATACGATGGTGGCGTGCCGGCGTGCGGTTGCAGTAGTGGGGTGCGGTGTAATTTATTCCCCGCTGCACAAAAGTACACCGCGCC
CCACTATTTCTTCCCATCTCCCCCTTTCTCCCTCTCTACTGCAACCGCACGCCGGCACGCCACCATCGTATTTTGTCGCAGCCGCACGGCTAGTTGCCTGTCGCAAGATC
AACAATCTTCGATCTCTCAACAACGAGTTCGATTCTTTAGGTTGTCCAAGACTTCAACTTCTCAAACATGTCTGGTGAGGAGGAAGAAAATGCTGCAGAGCTTAAAATTG
GGGATGAAAACATCAAAGGTGACCACAGACATTTATTTCCTTTGGCTGCTTGCAGAGTTCTTAAAGGCCAAGTGTTTAATGAATTGTGAAGTTTCTTTGATCCTTGAACA
CAAATATGAGCAGCTCCAGCAGATGTCTGAGGATCCAATGAATCAAGTTTCTCAAGTGTTCGAAAAGTCATTGCAGTACGTGAAACGCTTCAGCCGTTATAAAAATCCTG
ATGCTGTTAGACAAGTACGAGAGTATCCTTTAAACTGA

mRNA sequence

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Protein sequence

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ATSRAAATKYDGGVPACGCSSGVRCNLFPAAQKYTAPHYFFPSPPFSLSTATARRHATIVFCRSRTASCLSQDQQSSISQQRVRFFRLSKTSTSQTCLVRRKKMLQSLKL
GMKTSKVTTDIYFLWLLAEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREYPLN

Spg019918 (gene) of Sponge gourd (cylindrica) v1 genome