; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg019942 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019942
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold5:35625385..35631163
RNA-Seq ExpressionSpg019942
SyntenySpg019942
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4366503.1 hypothetical protein F8388_003741 [Cannabis sativa]1.0e-1338.71Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        WSPP  G WK+N+DA   +   +   G +IRD +G+++ +SS      L    AE  A++ G+KLAL+ G  K +V  DC  AIN IN  S+  ++V+ L
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCN
        LE+I  L  +F+ ++F+F  R  N
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCN

KAF4381263.1 hypothetical protein G4B88_009591 [Cannabis sativa]3.5e-1436.36Show/hide
Query:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV
        P     CWSPPP G + +N DA+ I   P  GLG +IRD  G++V A++ ++  YL   MAE  AI   +KLA S     I +  D Q  I  +  +++ 
Subjt:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV

Query:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
          +   +LED      +FN + F F PR+CN+
Subjt:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

KAF4400944.1 hypothetical protein G4B88_013785 [Cannabis sativa]1.0e-1338.71Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        WSPP  G WK+N+DA   +   +   G +IRD +G+++ +SS      L    AE  A++ G+KLAL+ G  K +V  DC  AIN IN  S+  ++V+ L
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCN
        LE+I  L  +F+ ++F+F  R  N
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCN

XP_024042921.1 uncharacterized protein LOC112099707 [Citrus clementina]1.0e-1338.71Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        W PPPK ++K+N+DAA  +     GLG ++R+ NG IVAA+     F  E   AE  AI  GM++A S G   +  + DCQ+A++  N R     E+  +
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCN
        + DI S    F E+ FQ  PR  N
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCN

XP_030478193.1 uncharacterized protein LOC115695254 [Cannabis sativa]6.0e-1436.36Show/hide
Query:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV
        P     CWSPPP G + +N DA+ I   P  GLG +IRD  G++V A++ ++  YL   MAE  AI   +KLA S     I +  D Q  I  +  +++ 
Subjt:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV

Query:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
          +   +LED      +FN + F F PR+CN+
Subjt:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

TrEMBL top hitse value%identityAlignment
A0A1R3GKQ5 Reverse transcriptase8.5e-1436.84Show/hide
Query:  LRKAYNLKVVFTISRSLTNLPLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLK
        L K+ N  +V  I R        R   W  P  G WK+N DA+  SS    GLG +IRD  GKI+ + +  L F  +   AE  AIL G +LAL  G  +
Subjt:  LRKAYNLKVVFTISRSLTNLPLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLK

Query:  IKVDFDCQMAINFINKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
          ++ D  +AI+ INK+  V  E   L+E+I  +   F+   FQF+ R+ NS
Subjt:  IKVDFDCQMAINFINKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

A0A7J6F1G1 Uncharacterized protein8.5e-1436.36Show/hide
Query:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV
        P     CWSPPP G + +N DA+ I   P  GLG +IRD  G++V A++ ++   L   MAE  AI   MKLA S     I +  D Q  I  +  +++ 
Subjt:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV

Query:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
          +   +LED      +FN + F F PR+CN+
Subjt:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

A0A7J6F713 Uncharacterized protein5.0e-1438.71Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        WSPP  G WK+N+DA   +   +   G +IRD +G+++ +SS      L    AE  A++ G+KLAL+ G  K +V  DC  AIN IN  S+  ++V+ L
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCN
        LE+I  L  +F+ ++F+F  R  N
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCN

A0A7J6GEF1 RNase H domain-containing protein1.7e-1436.36Show/hide
Query:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV
        P     CWSPPP G + +N DA+ I   P  GLG +IRD  G++V A++ ++  YL   MAE  AI   +KLA S     I +  D Q  I  +  +++ 
Subjt:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKV

Query:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
          +   +LED      +FN + F F PR+CN+
Subjt:  WNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

A0A7J6I094 RNase H domain-containing protein5.0e-1438.71Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        WSPP  G WK+N+DA   +   +   G +IRD +G+++ +SS      L    AE  A++ G+KLAL+ G  K +V  DC  AIN IN  S+  ++V+ L
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCN
        LE+I  L  +F+ ++F+F  R  N
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein5.4e-0527.17Show/hide
Query:  VIYPNEHPGKIFVLRKAYNLKVVFTISRSLTNLPLIRNACWSPPPKGFWKLNLDAACI--------SSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPH
        +I+ N H   I  + KA    + +  ++    LP +R A  +P P     L  D  C         SS+  +G        + K +   S     +  P 
Subjt:  VIYPNEHPGKIFVLRKAYNLKVVFTISRSLTNLPLIRNACWSPPPKGFWKLNLDAACI--------SSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPH

Query:  MAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS
         AE  AI   M  AL +    + V  D +  ++ +N    + NE+  LL +I S+   F  I FQFIPR  NS
Subjt:  MAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNS

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.4e-0726.57Show/hide
Query:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL
        W  PP  + K N DA      P  G+G ++R+++G ++   +  L        AE  A+   +         +I  + D Q  +N +N     W  ++  
Subjt:  WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEAL

Query:  LEDIYSLMGSFNEIDFQFIPRQCNSRPSRNLRSRRGQCDSKPK
        LEDI  L+  F E+ F+F PR  N    R  R      +  PK
Subjt:  LEDIYSLMGSFNEIDFQFIPRQCNSRPSRNLRSRRGQCDSKPK

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)6.0e-0428.57Show/hide
Query:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMG
        P  R+  WSPPP+G+ K N D+  +     T    +IRD NG ++ +    L        AE    L  +++    G
Subjt:  PLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMG

AT4G29090.1 Ribonuclease H-like superfamily protein2.6e-0728.21Show/hide
Query:  RNAC--WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIV---AASSIHLDFYLEPHMAEQRAILEGMKLA-LSMGCLK---IKVDFDCQMAINFI
        R++C  W PPP  + K N DA         G+G ++R++ G++    A +   L   LE       A LE M+ A LS+   +   +  + D Q+ I  +
Subjt:  RNAC--WSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIV---AASSIHLDFYLEPHMAEQRAILEGMKLA-LSMGCLK---IKVDFDCQMAINFI

Query:  NKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNSRPSRNLRSRRGQCDSKPK
        N   ++W  ++  ++D+  L+  F E+ F FIPR+ N+   R  R      +  PK
Subjt:  NKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNSRPSRNLRSRRGQCDSKPK

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.6e-0726.56Show/hide
Query:  RNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNE
        RN  WSPP +   K N DA+       +GLG ++R+  G ++          +    AE   ++  ++ +   G  K+  + D Q     IN +S     
Subjt:  RNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIHLDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNE

Query:  VEALLEDIYSLMGSFNEIDFQFIPRQCN
        ++  L+ I S + SF  I+F F  R+ N
Subjt:  VEALLEDIYSLMGSFNEIDFQFIPRQCN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGCATCGTCCCTATGGATACTAGTATCCACACTTTCAACATATACGACAAGGAAACAATTGTGGTACATCCCGTTATATACCCCAACGAACATCCAGGCAAGAT
CTTCGTTCTCAGAAAAGCTTATAATCTGAAAGTTGTCTTCACCATTAGTAGATCTCTCACAAATCTCCCTCTTATCCGAAATGCATGCTGGTCTCCCCCTCCCAAAGGCT
TCTGGAAGTTGAATTTGGACGCCGCATGCATCTCTTCGATCCCTGCGACTGGTTTGGGATCACTGATTAGGGATAAAAATGGGAAGATCGTGGCTGCTTCCTCTATTCAC
CTGGACTTTTACCTAGAACCTCATATGGCAGAGCAAAGAGCTATCCTCGAAGGAATGAAACTTGCCCTCTCGATGGGTTGCCTGAAAATCAAAGTGGACTTTGATTGTCA
GATGGCAATTAATTTCATCAACAAACGCTCTAAAGTGTGGAATGAAGTGGAGGCTTTATTGGAGGACATCTATAGCTTAATGGGGTCTTTTAACGAAATAGATTTTCAAT
TCATTCCCAGGCAATGTAATTCTAGACCATCCCGGAATCTAAGGAGCAGACGAGGACAGTGCGACTCGAAACCGAAGACACAACCCAAAAACGGACCACAAAGGGAAAAT
GGGCCAAGGGCGAAGGGATTGGGCCTTGGCCTAACCCCGCTTGGCCGAGGCCGAGGCCTACCCTCGGCTCTCGTTTCCTCCCTTCCGCTCAGTCCCTGGAGTCTTTTGGT
TGCCCCGGTTCAACCTGGTTCAGCCCGAATCGTCTTCCAACGCCTAGAAACCCTAAAAAGGGCAAAGCATTGGAGGCGGTGTGGCAAGCACCACATCGGTGTGCAGGTTT
CCCTTGTTTTGCAGGCCACGTCTTCCCCTTCAAATAAATTCACTGTTGGTGGTGAAAATGTCCTTGGTGGAGTGGAAACCTCGATACTCCCCAAGGCAAACGACATGGAA
ATGTCCTCGGTGGAGTGGAAACCCCGATACTCCCCTAGGCAAACGACAGGCGAAAATGTCCTTGGTAGAGTGGAAACCCCGATACGCTCCAAGGCAGACGACATGAAAAT
GTCTTTAGTGGAGTGGAAACCTCGATACTCCCCAAGGCAATCGACAGCCAGAGCATCCCCGGAGTTGGAGCCAAGGCTCGGATCAGAATCATACCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGCATCGTCCCTATGGATACTAGTATCCACACTTTCAACATATACGACAAGGAAACAATTGTGGTACATCCCGTTATATACCCCAACGAACATCCAGGCAAGAT
CTTCGTTCTCAGAAAAGCTTATAATCTGAAAGTTGTCTTCACCATTAGTAGATCTCTCACAAATCTCCCTCTTATCCGAAATGCATGCTGGTCTCCCCCTCCCAAAGGCT
TCTGGAAGTTGAATTTGGACGCCGCATGCATCTCTTCGATCCCTGCGACTGGTTTGGGATCACTGATTAGGGATAAAAATGGGAAGATCGTGGCTGCTTCCTCTATTCAC
CTGGACTTTTACCTAGAACCTCATATGGCAGAGCAAAGAGCTATCCTCGAAGGAATGAAACTTGCCCTCTCGATGGGTTGCCTGAAAATCAAAGTGGACTTTGATTGTCA
GATGGCAATTAATTTCATCAACAAACGCTCTAAAGTGTGGAATGAAGTGGAGGCTTTATTGGAGGACATCTATAGCTTAATGGGGTCTTTTAACGAAATAGATTTTCAAT
TCATTCCCAGGCAATGTAATTCTAGACCATCCCGGAATCTAAGGAGCAGACGAGGACAGTGCGACTCGAAACCGAAGACACAACCCAAAAACGGACCACAAAGGGAAAAT
GGGCCAAGGGCGAAGGGATTGGGCCTTGGCCTAACCCCGCTTGGCCGAGGCCGAGGCCTACCCTCGGCTCTCGTTTCCTCCCTTCCGCTCAGTCCCTGGAGTCTTTTGGT
TGCCCCGGTTCAACCTGGTTCAGCCCGAATCGTCTTCCAACGCCTAGAAACCCTAAAAAGGGCAAAGCATTGGAGGCGGTGTGGCAAGCACCACATCGGTGTGCAGGTTT
CCCTTGTTTTGCAGGCCACGTCTTCCCCTTCAAATAAATTCACTGTTGGTGGTGAAAATGTCCTTGGTGGAGTGGAAACCTCGATACTCCCCAAGGCAAACGACATGGAA
ATGTCCTCGGTGGAGTGGAAACCCCGATACTCCCCTAGGCAAACGACAGGCGAAAATGTCCTTGGTAGAGTGGAAACCCCGATACGCTCCAAGGCAGACGACATGAAAAT
GTCTTTAGTGGAGTGGAAACCTCGATACTCCCCAAGGCAATCGACAGCCAGAGCATCCCCGGAGTTGGAGCCAAGGCTCGGATCAGAATCATACCAATAG
Protein sequenceShow/hide protein sequence
MACIVPMDTSIHTFNIYDKETIVVHPVIYPNEHPGKIFVLRKAYNLKVVFTISRSLTNLPLIRNACWSPPPKGFWKLNLDAACISSIPATGLGSLIRDKNGKIVAASSIH
LDFYLEPHMAEQRAILEGMKLALSMGCLKIKVDFDCQMAINFINKRSKVWNEVEALLEDIYSLMGSFNEIDFQFIPRQCNSRPSRNLRSRRGQCDSKPKTQPKNGPQREN
GPRAKGLGLGLTPLGRGRGLPSALVSSLPLSPWSLLVAPVQPGSARIVFQRLETLKRAKHWRRCGKHHIGVQVSLVLQATSSPSNKFTVGGENVLGGVETSILPKANDME
MSSVEWKPRYSPRQTTGENVLGRVETPIRSKADDMKMSLVEWKPRYSPRQSTARASPELEPRLGSESYQ