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Spg019956 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019956
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein Iojap-related, mitochondrial
Genome locationscaffold5:36211274..36217840
RNA-Seq ExpressionSpg019956
SyntenySpg019956
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0090071 - negative regulation of ribosome biogenesis (biological process)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR043519 - Nucleotidyltransferase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061023.1 protein Iojap-related [Cucumis melo var. makuwa]9.0e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

XP_008444425.1 PREDICTED: protein Iojap-related, mitochondrial [Cucumis melo]9.0e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

XP_011649516.1 protein Iojap-related, mitochondrial [Cucumis sativus]9.0e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

XP_022131306.1 protein Iojap-related, mitochondrial [Momordica charantia]3.1e-1074.47Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM
        +V   GK+VVHALDENA+TYYN+ESLWSTET  DDSS DLD+ALVK+
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM

XP_038884261.1 protein Iojap-related, mitochondrial [Benincasa hispida]6.9e-1072.34Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM
        +V   GK+VVHALDENA++YYN+ESLWSTET QDDSS DLD+A VK+
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM

TrEMBL top hitse value%identityAlignment
A0A0A0LNG9 Uncharacterized protein4.4e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

A0A1S3BB26 protein Iojap-related, mitochondrial4.4e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

A0A5A7UYH0 Protein Iojap-related4.4e-1062.71Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP
        +V   GK+VVHALDENA++YYN+ESLWSTET  DDS+ DLD+ALVK+   P+    KKP
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKP

A0A6J1BP74 protein Iojap-related, mitochondrial1.5e-1074.47Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM
        +V   GK+VVHALDENA+TYYN+ESLWSTET  DDSS DLD+ALVK+
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM

A0A6J1HAW7 protein Iojap-related, mitochondrial9.7e-1070.21Show/hide
Query:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM
        +V   GK+VVHALDENA+TYYN+ESLWS +T QDDSS +LD+ALVK+
Subjt:  LVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKM

SwissProt top hitse value%identityAlignment
C0Z361 Chaperonin 60 subunit beta 3, chloroplastic4.1e-0575.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

P21240 Chaperonin 60 subunit beta 1, chloroplastic5.3e-0575.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

P21241 RuBisCO large subunit-binding protein subunit beta, chloroplastic5.3e-0575.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

Q9CAF9 Protein Iojap-related, mitochondrial4.1e-0549.09Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKMYCMPELQRFKKP
        GK VVHALDE A+ Y+N+ESLWS E+   D S  DL    VK+   P+    +KP
Subjt:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKMYCMPELQRFKKP

Q9LJE4 Chaperonin 60 subunit beta 2, chloroplastic5.3e-0575.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

Arabidopsis top hitse value%identityAlignment
AT1G55490.1 chaperonin 60 beta3.8e-0675.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

AT1G55490.2 chaperonin 60 beta3.8e-0675.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

AT1G67620.1 Lojap-related protein2.9e-0649.09Show/hide
Query:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKMYCMPELQRFKKP
        GK VVHALDE A+ Y+N+ESLWS E+   D S  DL    VK+   P+    +KP
Subjt:  GKIVVHALDENAKTYYNMESLWSTETR-QDDSSHDLDKALVKMYCMPELQRFKKP

AT5G56500.1 TCP-1/cpn60 chaperonin family protein2.9e-0675.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA

AT5G56500.2 TCP-1/cpn60 chaperonin family protein2.9e-0675.76Show/hide
Query:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA
        GV    +VELE PVENIGAKLVRQ A+KTNDLA
Subjt:  GVFTDHDVELEFPVENIGAKLVRQDATKTNDLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGTCACTTTTGAGGGTAAAATAGTTGTTCATGCCCTTGATGAGAACGCCAAAACTTACTACAATATGGAGAGCCTTTGGTCTACTGAGACACGACAAGATGACTC
TTCTCATGATTTGGACAAAGCTTTAGTGAAGATGTATTGTATGCCTGAGTTGCAAAGATTCAAGAAGCCTCATGATAGCCCCATTCCGATAGTCTCTAGTAATGTAATGT
TAGGTGTGTTTACTGATCATGATGTTGAATTGGAGTTTCCAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAGATGCTACAAAGACCAATGACTTGGCTAAATCTAGG
CTCCTTCATTGGGGTTTTCAGATCTGGCCGGAAACTACGCGCGTGGGTCTTTCTGGTCTGACAGTCGTGGGTCTTGTGTGTTGCAGTCGAAAACGAGGAGAGAGGGATGC
AATCGGCGTTGCTCACGAAGACACAGTCCCTCAGATCTCGCAAAGACGAAGCCGAAAACACAGTCCCTCAGATCTTGCGAAGATGCAACTGAAATCGCAGTCCCTCAGAT
CTCGCGAAGACGCAGCCGAAAACCAGTCCCTTAGATCTCGCGAAGATTCGCTCACCGTCGTTCACGAAGATCCACTCATTGTCGCTCACGAATATCCTCTCAGCTCTTTG
TTCAATCGCAACCCAGCTCAGAGGCGCCACCGTTCAGATCTTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGTCACTTTTGAGGGTAAAATAGTTGTTCATGCCCTTGATGAGAACGCCAAAACTTACTACAATATGGAGAGCCTTTGGTCTACTGAGACACGACAAGATGACTC
TTCTCATGATTTGGACAAAGCTTTAGTGAAGATGTATTGTATGCCTGAGTTGCAAAGATTCAAGAAGCCTCATGATAGCCCCATTCCGATAGTCTCTAGTAATGTAATGT
TAGGTGTGTTTACTGATCATGATGTTGAATTGGAGTTTCCAGTTGAGAACATTGGTGCGAAGCTAGTCAGACAAGATGCTACAAAGACCAATGACTTGGCTAAATCTAGG
CTCCTTCATTGGGGTTTTCAGATCTGGCCGGAAACTACGCGCGTGGGTCTTTCTGGTCTGACAGTCGTGGGTCTTGTGTGTTGCAGTCGAAAACGAGGAGAGAGGGATGC
AATCGGCGTTGCTCACGAAGACACAGTCCCTCAGATCTCGCAAAGACGAAGCCGAAAACACAGTCCCTCAGATCTTGCGAAGATGCAACTGAAATCGCAGTCCCTCAGAT
CTCGCGAAGACGCAGCCGAAAACCAGTCCCTTAGATCTCGCGAAGATTCGCTCACCGTCGTTCACGAAGATCCACTCATTGTCGCTCACGAATATCCTCTCAGCTCTTTG
TTCAATCGCAACCCAGCTCAGAGGCGCCACCGTTCAGATCTTCGTTAG
Protein sequenceShow/hide protein sequence
MLVTFEGKIVVHALDENAKTYYNMESLWSTETRQDDSSHDLDKALVKMYCMPELQRFKKPHDSPIPIVSSNVMLGVFTDHDVELEFPVENIGAKLVRQDATKTNDLAKSR
LLHWGFQIWPETTRVGLSGLTVVGLVCCSRKRGERDAIGVAHEDTVPQISQRRSRKHSPSDLAKMQLKSQSLRSREDAAENQSLRSREDSLTVVHEDPLIVAHEYPLSSL
FNRNPAQRRHRSDLR