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Spg019992 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019992
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold5:29692378..29692763
RNA-Seq ExpressionSpg019992
SyntenySpg019992
Gene Ontology termsGO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:1901564 - organonitrogen compound metabolic process (biological process)
GO:0043229 - intracellular organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW36722.1 putative ribonuclease H protein [Vitis vinifera]2.5e-0959.62Show/hide
Query:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG
        LW R +EG   HL+RWYVVS+ +ELGGLG G   + N ALLGKWLW  L +G
Subjt:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG

RVW45477.1 Alanine--tRNA ligase [Vitis vinifera]1.2e-0848.1Show/hide
Query:  LPDGDCLP--GRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLV
        LP G  LP   + P+ +  KI+       LW  V EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW  +V
Subjt:  LPDGDCLP--GRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLV

RVW63734.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]7.2e-0948.61Show/hide
Query:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG
        PG+ P+ +  KI+       LW  + EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW    EG
Subjt:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG

RVX13541.1 putative ribonuclease H protein [Vitis vinifera]1.6e-0850Show/hide
Query:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW
        PG+ P+ +  KI+       LW  + EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW
Subjt:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW

XP_022151711.1 uncharacterized protein LOC111019624 [Momordica charantia]3.8e-1069.57Show/hide
Query:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW
        LWE V+EGGGAHL+ W  VSK  E GGLG+GNL+L NEA L KWLW
Subjt:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW

TrEMBL top hitse value%identityAlignment
A0A438DMP8 Putative ribonuclease H protein1.2e-0959.62Show/hide
Query:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG
        LW R +EG   HL+RWYVVS+ +ELGGLG G   + N ALLGKWLW  L +G
Subjt:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG

A0A438ECA0 Alanine--tRNA ligase6.0e-0948.1Show/hide
Query:  LPDGDCLP--GRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLV
        LP G  LP   + P+ +  KI+       LW  V EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW  +V
Subjt:  LPDGDCLP--GRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLV

A0A438FUW3 LINE-1 retrotransposable element ORF2 protein3.5e-0948.61Show/hide
Query:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG
        PG+ P+ +  KI+       LW  + EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW    EG
Subjt:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEG

A0A438JX63 Putative ribonuclease H protein7.8e-0950Show/hide
Query:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW
        PG+ P+ +  KI+       LW  + EG   HL+RW VV K +E+GGLG GN+ L N ALLGKWLW
Subjt:  PGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW

A0A6J1DFI2 uncharacterized protein LOC1110196241.9e-1069.57Show/hide
Query:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW
        LWE V+EGGGAHL+ W  VSK  E GGLG+GNL+L NEA L KWLW
Subjt:  LWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGGAAAAATGGGAAATGCGACAAAGGGGAGCTCGTGTGTGGCAGTGTCGATCTTTTACCAGACGGCGATTGTCTTCCTGGAAGAAAACCTTCTTTTCTAAAGGG
GAAGATTGACCTTGATTCAGTCTGGACTTCTTTGTGGGAAAGAGTGGATGAGGGGGGTGGGGCTCACCTGATGAGGTGGTATGTGGTTTCTAAGGATGAGGAGTTGGGGG
GATTAGGCATTGGTAACTTGAAGCTTCACAATGAGGCCCTTTTAGGGAAATGGTTGTGGTGCTCCTTGGTAGAAGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGGAAAAATGGGAAATGCGACAAAGGGGAGCTCGTGTGTGGCAGTGTCGATCTTTTACCAGACGGCGATTGTCTTCCTGGAAGAAAACCTTCTTTTCTAAAGGG
GAAGATTGACCTTGATTCAGTCTGGACTTCTTTGTGGGAAAGAGTGGATGAGGGGGGTGGGGCTCACCTGATGAGGTGGTATGTGGTTTCTAAGGATGAGGAGTTGGGGG
GATTAGGCATTGGTAACTTGAAGCTTCACAATGAGGCCCTTTTAGGGAAATGGTTGTGGTGCTCCTTGGTAGAAGGTGATTGA
Protein sequenceShow/hide protein sequence
MARKNGKCDKGELVCGSVDLLPDGDCLPGRKPSFLKGKIDLDSVWTSLWERVDEGGGAHLMRWYVVSKDEELGGLGIGNLKLHNEALLGKWLWCSLVEGD