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Spg019995 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg019995
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:30697452..30698196
RNA-Seq ExpressionSpg019995
SyntenySpg019995
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1967.39Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    FNVSVGST IVRGD+VCWLHAVF AK AGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-2066.67Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.3e-2280.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.3e-2278.95Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV
        +VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GG  GGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.1e-2066.67Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.1e-2067.39Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMSGLH V    FNVSVGST IVRGD+VCWLHAVF AK AGG GGGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV

A0A5A7V9N3 Reverse transcriptase1.0e-2066.67Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.1e-2280.52Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIEL VPDTLPTSAES  S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.5e-2378.95Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV
        +VEIELPVPDTLPTS ESS S+SSYF NQVMSGLH V    FN+SV STGIVRGDDVCWLHAVFRAK  GG  GGV
Subjt:  LVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGV

A0A5D3DSY7 Putative Retrotransposon protein1.0e-2066.67Show/hide
Query:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT
        +VEIELPVPDTLPTSAESS S+SS                YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG GGGVT
Subjt:  LVEIELPVPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTA
CTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACG
CCGTCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTA
CTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACG
CCGTCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATAA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVGLVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGLGGGVT