CuGenDBv2

Gene ID	Spg020008
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	plant UBX domain-containing protein 4
Genome location	scaffold5:35408712..35412382
RNA-Seq Expression	Spg020008
Synteny	Spg020008
Gene Ontology terms	GO:0000045 - autophagosome assembly (biological process) GO:0007030 - Golgi organization (biological process) GO:0031468 - nuclear envelope reassembly (biological process) GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process) GO:0061025 - membrane fusion (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004145429.1 plant UBX domain-containing protein 4 [Cucumis sativus]

3.8e-16

83.64

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRD+KPSKPS SRTGGIRTLSDLNRRSPDSVGDPD PQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

XP_008458991.1 PREDICTED: plant UBX domain-containing protein 4 [Cucumis melo]

2.6e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

XP_022954866.1 plant UBX domain-containing protein 4-like [Cucurbita moschata]

2.6e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

XP_022994917.1 plant UBX domain-containing protein 4-like [Cucurbita maxima]

2.6e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

XP_023523857.1 plant UBX domain-containing protein 4-like [Cucurbita pepo subsp. pepo]

2.6e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M3Q0 Uncharacterized protein

1.8e-16

83.64

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRD+KPSKPS SRTGGIRTLSDLNRRSPDSVGDPD PQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

A0A1S3C997 plant UBX domain-containing protein 4

1.3e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

A0A5A7TIL3 Plant UBX domain-containing protein 4

1.3e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

A0A6J1GS51 plant UBX domain-containing protein 4-like

1.3e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

A0A6J1JX93 plant UBX domain-containing protein 4-like

1.3e-17

87.27

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD
        M SRDDKPSKPS SRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRD

SwissProt top hits

e value

%identity

Alignment

Q8RWU7 Plant UBX domain-containing protein 4

2.4e-13

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD
        M S+D KPSKPS SR GGIRTLSDLNRRS PDS  D DGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD

Q9SUG6 Plant UBX domain-containing protein 3

6.9e-13

69.64

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD
        M S+D K SKP+  RTGGIRTLSDLNRRS PDS  D DGPQEY+TGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD

Arabidopsis top hits

e value

%identity

Alignment

AT4G04210.1 plant UBX domain containing protein 4

1.7e-14

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD
        M S+D KPSKPS SR GGIRTLSDLNRRS PDS  D DGPQEYYTGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD

AT4G15410.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma

7.9e-04

47.92

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Query:  SKPSGSRTGGIRTLSDLNRRSPDSVG-DPDGPQEYYTGGEKRNPFVRD
        S  S    G IRT +DLNR   D  G D D   EYYTGG+K    V+D
Subjt:  SKPSGSRTGGIRTLSDLNRRSPDSVG-DPDGPQEYYTGGEKRNPFVRD

AT4G22150.1 plant UBX domain-containing protein 3

4.9e-14

69.64

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Query:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD
        M S+D K SKP+  RTGGIRTLSDLNRRS PDS  D DGPQEY+TGGEK    V+D
Subjt:  MESRDDKPSKPSGSRTGGIRTLSDLNRRS-PDSVGDPDGPQEYYTGGEKRNPFVRD

Sequences

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CDS sequence

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ATGGAGTCACGAGACGACAAGCCATCGAAGCCCTCTGGCAGTCGGACCGGTGGCATTCGAACCCTTTCTGATCTGAACCGTCGCTCGCCTGATTCTGTCGGCGACCCCGA
TGGTCCTCAAGAGTATTACACGGGTGGTGAGAAGAGGAATCCGTTTGTGAGGGATTGTGGCTTCTTGTCAGTTTACCAAATGGCTGCTACTTTGAGGCTTCCTCCTCAAG
AAGTTCCTCATAGAATGATTGAGCTAAAGTCAATTTTACCCTTTGAGATAATGGTCTTCTTCCGTAATCTTTTGCCGCACAGAAGATGGTCTGCACATCCAGTAGAAAGA
ACACTGATTGCCAGAAAGCCAAAGCCCTTGGATTGCAAAGCATCAGGTTTTCCATTTTCTACGGTTACTACTAGACAAGTCATCAAAAGCATCAGGGAAGCATGGAACAT
TGGGGTAAGGACAAAGATTCTGATAGTTAATGCAGTTATGGTTTCCTTTTGCATGGGTGACTTGGCTCTTGAAGAATTTTGGTGTGAAGGCTATGAAGAGTGA

mRNA sequence

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Protein sequence

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MESRDDKPSKPSGSRTGGIRTLSDLNRRSPDSVGDPDGPQEYYTGGEKRNPFVRDCGFLSVYQMAATLRLPPQEVPHRMIELKSILPFEIMVFFRNLLPHRRWSAHPVER
TLIARKPKPLDCKASGFPFSTVTTRQVIKSIREAWNIGVRTKILIVNAVMVSFCMGDLALEEFWCEGYEE

Spg020008 (gene) of Sponge gourd (cylindrica) v1 genome