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Spg020014 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020014
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag-pol polyprotein
Genome locationscaffold5:36154740..36159020
RNA-Seq ExpressionSpg020014
SyntenySpg020014
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]3.3e-0658Show/hide
Query:  NTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        N   VV  +++ +RVA   TQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  NTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]8.1e-0552.94Show/hide
Query:  SNTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        + T   ++ D   +RVA   TQYA+ FGDKTEW A ++ TQ+GIHSFP LG
Subjt:  SNTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-0465Show/hide
Query:  IRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        IRVA   TQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  IRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0047518.1 gag-protease polyprotein [Cucumis melo var. makuwa]1.7e-0750.67Show/hide
Query:  MNNLFMVQLSNRNPSRASERVEPFVQDLETPLKGTLIYFLKSRKGVNSILCDYVPSSPIGL---VPK-MDTPTRM
        +NN F VQ  N+NPSRA+E+V P VQDL++ LKGT     +   GVN  L  YVPS P+G+    PK  D PTR+
Subjt:  MNNLFMVQLSNRNPSRASERVEPFVQDLETPLKGTLIYFLKSRKGVNSILCDYVPSSPIGL---VPK-MDTPTRM
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.3e-0669.23Show/hide
Query:  RIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        ++RVA   TQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  RIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.6e-0658Show/hide
Query:  NTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        N   VV  +++ +RVA   TQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  NTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein6.7e-0565Show/hide
Query:  IRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        IRVA   TQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  IRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein2.1e-0669.23Show/hide
Query:  RIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        ++RVA   TQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  RIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5D3C1P5 Gag-pol polyprotein3.9e-0552.94Show/hide
Query:  SNTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        + T   ++ D   +RVA   TQYA+ FGDKTEW A ++ TQ+GIHSFP LG
Subjt:  SNTKRVVSYDVTRIRVANTLTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5D3DRY2 Gag-protease polyprotein8.4e-0850.67Show/hide
Query:  MNNLFMVQLSNRNPSRASERVEPFVQDLETPLKGTLIYFLKSRKGVNSILCDYVPSSPIGL---VPK-MDTPTRM
        +NN F VQ  N+NPSRA+E+V P VQDL++ LKGT     +   GVN  L  YVPS P+G+    PK  D PTR+
Subjt:  MNNLFMVQLSNRNPSRASERVEPFVQDLETPLKGTLIYFLKSRKGVNSILCDYVPSSPIGL---VPK-MDTPTRM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACCTGTTTATGGTCCAACTATCAAACAGAAACCCCTCTCGGGCCAGTGAGAGGGTAGAGCCCTTTGTTCAAGACCTGGAGACACCACTTAAGGGAACACTCAT
CTACTTCCTCAAAAGTCGGAAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCAATCGGTCTTGTCCCCAAAATGGATACCCCCACTCGCATGTCTACTA
CATGGACGCTTTGGATCAATACATCTGTATCAAATACAAAGCGGGTCGTATCATATGATGTTACCAGGATAAGAGTGGCCAATACGCTAACTCAATATGCCTTCCTTTTT
GGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCCTGTTGGTACGTGCCTTTGAGATC
TGAAAGTGAGAGAATACATATAAATAATGAGATCGAGTTTTACTCTCACATTCCCCCGAGTTCACACCGTGAGGTCCATGCTCGACTTCGTGTCGCCTTTGGAGCGGCCT
CCCTTCAGATAGTGTTTGCATGGGTCAATAACAAGGTGAATGGGAAAAATGTTTATAGTCCATTAGGTCCCACCGGTAGCTCTATTAGGGCGTTGAGCGGGAAAAAGAAA
GAACACCGTGCTATTTTTCTACGATCTCTAGGAGAAAAGGCGATACCGATCAAGAACTTCTACAAGGGTAAGTCTCCAACCCTAAGGTCGTACCGTGAGATTCTTATGAT
CCGCTTGCGTGTTGTCCTGGAGCGACCATCCCTTCGGAGGGCCGATCATAGGTTTCAGAACACCGTGAACTCCAGAAATGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAACCTGTTTATGGTCCAACTATCAAACAGAAACCCCTCTCGGGCCAGTGAGAGGGTAGAGCCCTTTGTTCAAGACCTGGAGACACCACTTAAGGGAACACTCAT
CTACTTCCTCAAAAGTCGGAAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCAATCGGTCTTGTCCCCAAAATGGATACCCCCACTCGCATGTCTACTA
CATGGACGCTTTGGATCAATACATCTGTATCAAATACAAAGCGGGTCGTATCATATGATGTTACCAGGATAAGAGTGGCCAATACGCTAACTCAATATGCCTTCCTTTTT
GGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTCCTGTTGGTACGTGCCTTTGAGATC
TGAAAGTGAGAGAATACATATAAATAATGAGATCGAGTTTTACTCTCACATTCCCCCGAGTTCACACCGTGAGGTCCATGCTCGACTTCGTGTCGCCTTTGGAGCGGCCT
CCCTTCAGATAGTGTTTGCATGGGTCAATAACAAGGTGAATGGGAAAAATGTTTATAGTCCATTAGGTCCCACCGGTAGCTCTATTAGGGCGTTGAGCGGGAAAAAGAAA
GAACACCGTGCTATTTTTCTACGATCTCTAGGAGAAAAGGCGATACCGATCAAGAACTTCTACAAGGGTAAGTCTCCAACCCTAAGGTCGTACCGTGAGATTCTTATGAT
CCGCTTGCGTGTTGTCCTGGAGCGACCATCCCTTCGGAGGGCCGATCATAGGTTTCAGAACACCGTGAACTCCAGAAATGGATAG
Protein sequenceShow/hide protein sequence
MNNLFMVQLSNRNPSRASERVEPFVQDLETPLKGTLIYFLKSRKGVNSILCDYVPSSPIGLVPKMDTPTRMSTTWTLWINTSVSNTKRVVSYDVTRIRVANTLTQYAFLF
GDKTEWEAGDMTTQEGIHSFPLLGEVDESCWYVPLRSESERIHINNEIEFYSHIPPSSHREVHARLRVAFGAASLQIVFAWVNNKVNGKNVYSPLGPTGSSIRALSGKKK
EHRAIFLRSLGEKAIPIKNFYKGKSPTLRSYREILMIRLRVVLERPSLRRADHRFQNTVNSRNG