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Spg020036 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020036
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold1:27164827..27167058
RNA-Seq ExpressionSpg020036
SyntenySpg020036
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0048583 - regulation of response to stimulus (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004518 - nuclease activity (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74319.1 hypothetical protein VITISV_035345 [Vitis vinifera]4.6e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]4.6e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

RVW74143.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.6e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]4.6e-2045.36Show/hide
Query:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKST
        I W+SL++ GASGGI++LW +    A++V+ G FS+SV F+  +   +W+T VY P + K R   WQEL+DL+GLC  +W +G DFN+ R   E S+
Subjt:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKST

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]1.1e-2146.23Show/hide
Query:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKSTRVY
        +GW++L + G+SGGI++LWKE  +  +D + G+FS+S+ ++F+     W+T VYGPS  + R + W EL  L GLC+  WC+GGDFNVVR L EKS+   
Subjt:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKSTRVY

Query:  ATAFFI
         T   I
Subjt:  ATAFFI

TrEMBL top hitse value%identityAlignment
A0A438CWE0 Putative ribonuclease H protein2.3e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

A0A438DBQ9 DExH-box ATP-dependent RNA helicase DExH142.9e-2049.46Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W++L + GASGGI+++W  K+L+  +VV+G FSVS++F  D  + FW+++VYGPS S  R   W EL D+ GL S  WC+GGDFNV+R   +K
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

A0A438GPL3 Transposon TX1 uncharacterized 149 kDa protein2.3e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

A0A6J1CVN2 uncharacterized protein LOC1110146572.3e-2045.36Show/hide
Query:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKST
        I W+SL++ GASGGI++LW +    A++V+ G FS+SV F+  +   +W+T VY P + K R   WQEL+DL+GLC  +W +G DFN+ R   E S+
Subjt:  IGWSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKST

A5B9F0 Reverse transcriptase domain-containing protein2.3e-2050.54Show/hide
Query:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK
        W+ L + GASGGI+V+W  K+L + +VV+G FSVSV+F  D  + FW+++VYGP+ +  R   W+EL D+ GL S  WC+GGDFNV+R   EK
Subjt:  WSSLNSEGASGGIVVLWKEKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAAAAGACCGAATAGAAGATAGAAAGGAAAGGACGTCGATTCAGGCGGCTGGAAATTCGAAAGTAGGCGAAGATGTTAGCTGCAAAAGGAATGGAATGGGTAT
CGAAAAAGCAAAAGGAAAATCTATCATTCTGAGGAAGAGTGAGGAAGAGGATAATGTGGGACCTAGTCTCGAGAAGAGAAAACTAAATAAAAATGTGGAATACAGTGAAA
ATTCTAATGAAGGAATGTCAGAAAGCACGTGCTTCAAAAATCAGCCTCTGATAGGCTGGTCTTCGCTGAATTCCGAGGGGGCTTCGGGGGGCATTGTGGTGTTGTGGAAA
GAAAAGGAGCTTAAAGCGATTGATGTGGTTGTTGGTCGGTTCTCAGTGTCTGTGCAGTTCGAGTTTGATAACCAGAAGCTTTTCTGGGTGACTAGTGTTTATGGTCCTAG
TCGATCCAAAGGCAGGAGTAAGCTGTGGCAGGAGCTATATGATCTTAGTGGCCTTTGTAGTGCAGTCTGGTGTATCGGGGGAGACTTTAATGTGGTTAGATCGTTGGAAG
AAAAATCTACCCGAGTTTACGCCACTGCCTTCTTCATTGTAGACCGCCGCACGCCGCCGCCGTGTCTTCAATCTGTAACTTCGCCGCTGTGCACCAGGGACCGCTGCCGC
CACGTTTCAGCCGGTCTGTCGCACGTCGTCGCCACCGCCGCACGAGTTGTACGCTGCCGTCGTTCAGATCTATTTTTTTCCGTTGCTCAGAATCGATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAAAAAGACCGAATAGAAGATAGAAAGGAAAGGACGTCGATTCAGGCGGCTGGAAATTCGAAAGTAGGCGAAGATGTTAGCTGCAAAAGGAATGGAATGGGTAT
CGAAAAAGCAAAAGGAAAATCTATCATTCTGAGGAAGAGTGAGGAAGAGGATAATGTGGGACCTAGTCTCGAGAAGAGAAAACTAAATAAAAATGTGGAATACAGTGAAA
ATTCTAATGAAGGAATGTCAGAAAGCACGTGCTTCAAAAATCAGCCTCTGATAGGCTGGTCTTCGCTGAATTCCGAGGGGGCTTCGGGGGGCATTGTGGTGTTGTGGAAA
GAAAAGGAGCTTAAAGCGATTGATGTGGTTGTTGGTCGGTTCTCAGTGTCTGTGCAGTTCGAGTTTGATAACCAGAAGCTTTTCTGGGTGACTAGTGTTTATGGTCCTAG
TCGATCCAAAGGCAGGAGTAAGCTGTGGCAGGAGCTATATGATCTTAGTGGCCTTTGTAGTGCAGTCTGGTGTATCGGGGGAGACTTTAATGTGGTTAGATCGTTGGAAG
AAAAATCTACCCGAGTTTACGCCACTGCCTTCTTCATTGTAGACCGCCGCACGCCGCCGCCGTGTCTTCAATCTGTAACTTCGCCGCTGTGCACCAGGGACCGCTGCCGC
CACGTTTCAGCCGGTCTGTCGCACGTCGTCGCCACCGCCGCACGAGTTGTACGCTGCCGTCGTTCAGATCTATTTTTTTCCGTTGCTCAGAATCGATCGTAG
Protein sequenceShow/hide protein sequence
MVEKDRIEDRKERTSIQAAGNSKVGEDVSCKRNGMGIEKAKGKSIILRKSEEEDNVGPSLEKRKLNKNVEYSENSNEGMSESTCFKNQPLIGWSSLNSEGASGGIVVLWK
EKELKAIDVVVGRFSVSVQFEFDNQKLFWVTSVYGPSRSKGRSKLWQELYDLSGLCSAVWCIGGDFNVVRSLEEKSTRVYATAFFIVDRRTPPPCLQSVTSPLCTRDRCR
HVSAGLSHVVATAARVVRCRRSDLFFSVAQNRS