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Spg020083 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020083
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionARM repeat superfamily protein
Genome locationscaffold1:29002886..29003817
RNA-Seq ExpressionSpg020083
SyntenySpg020083
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603255.1 hypothetical protein SDJN03_03864, partial [Cucurbita argyrosperma subsp. sororia]3.9e-1280.77Show/hide
Query:  ILANPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        IL +PSLVLPSLVRLVYSSND+VLASA EAL+GVLK HNQN+  IF+LLDCV
Subjt:  ILANPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

XP_022151623.1 uncharacterized protein LOC111019538 [Momordica charantia]8.5e-1591.84Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSNDRVLASAGEALIG+LKRHNQN+E IFMLLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

XP_022967683.1 uncharacterized protein LOC111467138 [Cucurbita maxima]1.5e-1181.63Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSND+VLASA EAL+GVLK HNQN+  IF+LLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

XP_023543534.1 uncharacterized protein LOC111803391 isoform X2 [Cucurbita pepo subsp. pepo]5.7e-1179.59Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSND+VLASA EAL+GVLK HNQN+  I +LLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

XP_023543535.1 uncharacterized protein LOC111803391 isoform X3 [Cucurbita pepo subsp. pepo]5.7e-1179.59Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSND+VLASA EAL+GVLK HNQN+  I +LLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

TrEMBL top hitse value%identityAlignment
A0A1S4DUA0 uncharacterized protein LOC103486160 isoform X58.9e-1079.17Show/hide
Query:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        P+L LPSLVRLVY SND VLASA EALIGVLK HNQN+  I MLLDCV
Subjt:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

A0A5A7UYA3 Putative ARM repeat superfamily protein8.9e-1079.17Show/hide
Query:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        P+L LPSLVRLVY SND VLASA EALIGVLK HNQN+  I MLLDCV
Subjt:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

A0A6J1DCN8 uncharacterized protein LOC1110195384.1e-1591.84Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSNDRVLASAGEALIG+LKRHNQN+E IFMLLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

A0A6J1EPJ3 uncharacterized protein LOC1114354674.7e-1179.59Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSND+ LASA EAL+GVLK HNQN+  IF+LLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

A0A6J1HVT8 uncharacterized protein LOC1114671387.2e-1281.63Show/hide
Query:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV
        +PSLVLPSLVRLVYSSND+VLASA EAL+GVLK HNQN+  IF+LLDCV
Subjt:  NPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G57570.1 ARM repeat superfamily protein5.3e-0755.56Show/hide
Query:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLL
        PS VLP+LV L+Y+ N +V +SA E L+GVLK H ++ +VI MLL
Subjt:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLL

AT3G57570.2 ARM repeat superfamily protein5.3e-0755.56Show/hide
Query:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLL
        PS VLP+LV L+Y+ N +V +SA E L+GVLK H ++ +VI MLL
Subjt:  PSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATCCCTGCGGCATGTAGTCCATTTTCCTGTCAGTGGGTTCTACCTTCTTCCATATTCAGGCCTTCCCATACAATGTCTCTTGTCATAGTTTCAAGCATCTTAGC
CAACCCTTCTTTGGTTTTACCTTCTTTAGTACGTCTTGTCTACTCATCAAATGATAGAGTTCTAGCTTCTGCTGGTGAGGCTCTCATTGGTGTGCTCAAACGTCACAATC
AGAACGTTGAAGTGATTTTTATGCTACTTGACTGTGTTAGATTATCGGTTGTTAAGATCAAACTGGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATCCCTGCGGCATGTAGTCCATTTTCCTGTCAGTGGGTTCTACCTTCTTCCATATTCAGGCCTTCCCATACAATGTCTCTTGTCATAGTTTCAAGCATCTTAGC
CAACCCTTCTTTGGTTTTACCTTCTTTAGTACGTCTTGTCTACTCATCAAATGATAGAGTTCTAGCTTCTGCTGGTGAGGCTCTCATTGGTGTGCTCAAACGTCACAATC
AGAACGTTGAAGTGATTTTTATGCTACTTGACTGTGTTAGATTATCGGTTGTTAAGATCAAACTGGGATAA
Protein sequenceShow/hide protein sequence
MPIPAACSPFSCQWVLPSSIFRPSHTMSLVIVSSILANPSLVLPSLVRLVYSSNDRVLASAGEALIGVLKRHNQNVEVIFMLLDCVRLSVVKIKLG