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Spg020088 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020088
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:27093034..27097864
RNA-Seq ExpressionSpg020088
SyntenySpg020088
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-1656Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVTAP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           FNVSVGST IVRGD+VCWLHAVF AK AGGPG GV  P
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVTAP
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1656.12Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           F+V VGST IVRGDDVCWLHAVFRAK  GGPG GVT
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1664.63Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW       V V   W   IVR DDVCWLHAVFRAK AGGPG GV  PP
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.4e-1656.12Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           F+V VGST IVRGDDVCWLHAVFRAK  GGPG GVT
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1664.63Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW       V V   W   IVR DDVCWLHAVFRAK AGGPG GV  PP
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.2e-1656Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVTAP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           FNVSVGST IVRGD+VCWLHAVF AK AGGPG GV  P
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVTAP
A0A5A7V9N3 Reverse transcriptase6.8e-1756.12Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           F+V VGST IVRGDDVCWLHAVFRAK  GGPG GVT
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
A0A5A7VMG9 Reverse transcriptase2.0e-1664.63Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW       V V   W   IVR DDVCWLHAVFRAK AGGPG GV  PP
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
A0A5D3DSY7 Putative Retrotransposon protein6.8e-1756.12Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
        + VL     +VEIELPVPDTLPTSAESS S+SSTW                           F+V VGST IVRGDDVCWLHAVFRAK  GGPG GVT
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVT
A0A5D3DX39 Reverse transcriptase2.0e-1664.63Show/hide
Query:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
        + VL     +VEIELPVPDTLPTSAESS S+SSTW       V V   W   IVR DDVCWLHAVFRAK AGGPG GV  PP
Subjt:  MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFN-----VSVGSTW---IVRGDDVCWLHAVFRAKLAGGPGWGVTAPP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAA
CGTTTCAGTAGGGTCAACATGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGATGGGGTGTGACAGCTCCGC
CGCCTGAGTTCGCGCTGTCGCCTTCCCCAGCTGCCGCCGTCGCTCCTGTTCGACCAGCCCTCGTCGCGCCGCCCTCTTCGCGCGCGAGTCTTCTCTTCTCGTGGGTCGAC
GTTCTCTTCGCCCTCTCTCTCACTCGGCGTTGGCGTGGTGTTCGTCCAGTCGCGTGGGTTTTCTCGCACGGGTCTCTCTGTCTTCAAATTCGTGCTCGTCCAGCAACTCA
AGCTTCATTTTCGAGCATCCTCACCTCTGTCCAGCGGCGTTTTGACTCCGTTCTGGATCGTAGCAGCGTCGTTAACCTTGTCGCGGCTGAAAAGCCTTATCTGGAGCCGT
TTGGTGAACACCCATTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGCTCAAGTGTCGCCTCATTGGCTAGCATGTGTCACGGGAAGTGTAGCATGGGTCTAGTGGTAGCG
TTGCATGACGCCGTGGCACGTAATTCACGTGTTGGTTTGCGCAGCGTGGCGCGTATCGAGGATGATCCGAACCTTGGTGGCAAGGAGGAGAACTACGAGGATTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACATCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAA
CGTTTCAGTAGGGTCAACATGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGATGGGGTGTGACAGCTCCGC
CGCCTGAGTTCGCGCTGTCGCCTTCCCCAGCTGCCGCCGTCGCTCCTGTTCGACCAGCCCTCGTCGCGCCGCCCTCTTCGCGCGCGAGTCTTCTCTTCTCGTGGGTCGAC
GTTCTCTTCGCCCTCTCTCTCACTCGGCGTTGGCGTGGTGTTCGTCCAGTCGCGTGGGTTTTCTCGCACGGGTCTCTCTGTCTTCAAATTCGTGCTCGTCCAGCAACTCA
AGCTTCATTTTCGAGCATCCTCACCTCTGTCCAGCGGCGTTTTGACTCCGTTCTGGATCGTAGCAGCGTCGTTAACCTTGTCGCGGCTGAAAAGCCTTATCTGGAGCCGT
TTGGTGAACACCCATTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGCTCAAGTGTCGCCTCATTGGCTAGCATGTGTCACGGGAAGTGTAGCATGGGTCTAGTGGTAGCG
TTGCATGACGCCGTGGCACGTAATTCACGTGTTGGTTTGCGCAGCGTGGCGCGTATCGAGGATGATCCGAACCTTGGTGGCAAGGAGGAGAACTACGAGGATTCCTAG
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTWIVRGDDVCWLHAVFRAKLAGGPGWGVTAPPPEFALSPSPAAAVAPVRPALVAPPSSRASLLFSWVD
VLFALSLTRRWRGVRPVAWVFSHGSLCLQIRARPATQASFSSILTSVQRRFDSVLDRSSVVNLVAAEKPYLEPFGEHPLPVFEVLVELGSSVASLASMCHGKCSMGLVVA
LHDAVARNSRVGLRSVARIEDDPNLGGKEENYEDS