CuGenDBv2

Gene ID	Spg020098
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	exosome complex component RRP43
Genome location	scaffold1:22561050..22562058
RNA-Seq Expression	Spg020098
Synteny	Spg020098
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0006401 - RNA catabolic process (biological process) GO:0000178 - exosome (RNase complex) (cellular component)
InterPro domains	IPR001247 - Exoribonuclease, phosphorolytic domain 1 IPR020568 - Ribosomal protein S5 domain 2-type fold IPR027408 - PNPase/RNase PH domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7033523.1 Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

XP_004149399.1 exosome complex component RRP43 isoform X1 [Cucumis sativus]

4.1e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

XP_008460772.1 PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]

4.1e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

XP_008460773.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]

4.1e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

XP_023544252.1 exosome complex component RRP43 [Cucurbita pepo subsp. pepo]

4.1e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CD66 exosome complex component RRP43 isoform X1

2.0e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

A0A1S3CEE1 exosome complex component RRP43 isoform X2

2.0e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

A0A5D3BSR7 Ribosomal RNA-processing protein 43

5.8e-30

93.59

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH

A0A6J1DFM7 exosome complex component RRP43

2.0e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

A0A6J1ESF5 exosome complex component RRP43

2.0e-30

91.36

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSPIVRPGRPAEAAPVISKQLSDTISSS  +DLRELSLV GKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSH +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

SwissProt top hits

e value

%identity

Alignment

O26778 Exosome complex component Rrp42

1.2e-08

39.24

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Query:  PMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        PM SP   PG P E +  +S+ +   I  S  +DL +L ++ G   WM +LD++ +D DG+LFDAA+L+  AA    +I
Subjt:  PMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Q10205 Exosome complex component rrp43

9.3e-09

39.51

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        + P+CS   +PG P++ A V+S++L  T+  S  ++L+ L +   KAAW+ Y DI CL+ DGS FD A  +  AA    K+
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Q2KHU3 Exosome complex component RRP43

5.1e-07

34.57

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        + P+CS   R G P E A V S+ ++D I +S  +   +L + +GK AW+ Y D+ CL+ DG++ DA   +  AA  + ++
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Q96B26 Exosome complex component RRP43

1.0e-07

35.8

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        +PP+CS   R G P E A V S+ ++D I +S  +   +L +  GK  W+ Y D+ CLD DG++ DA   +  AA  + ++
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Q9D753 Exosome complex component RRP43

6.1e-08

35.8

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        +PP+CS   R G P E A V S+ ++D + +S  +   +L +  GK AW+ Y D+ CLD DG++ DA   +  AA  + ++
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Arabidopsis top hits

e value

%identity

Alignment

AT1G60080.1 3'-5'-exoribonuclease family protein

3.7e-29

79.01

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Query:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI
        MPP+CSP VRPGRPAEAAPVISK+LSDTI SS  +DL+EL LV+GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+ +I
Subjt:  MPPMCSPIVRPGRPAEAAPVISKQLSDTISSS--VDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKI

Sequences

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CDS sequence

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ATGCCTCCAATGTGCTCTCCCATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTGTCTGATACTATTTCAAGTTCTGTTGATTTGAGAGA
ATTATCTCTTGTTAATGGAAAAGCTGCTTGGATGGCATACCTGGATATTTACTGCTTGGATGCTGATGGATCTCTTTTCGATGCTGCACTTCTTTCTGCAGCTGCTGCAT
TTTCTCACTGTAAGATTTCAGGCTTTCAACTAGTTCATAACTTGATGTATTTCTGCATAATTTGGTAG

mRNA sequence

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Protein sequence

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MPPMCSPIVRPGRPAEAAPVISKQLSDTISSSVDLRELSLVNGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHCKISGFQLVHNLMYFCIIW

Spg020098 (gene) of Sponge gourd (cylindrica) v1 genome