; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020112 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020112
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold1:23454020..23460408
RNA-Seq ExpressionSpg020112
SyntenySpg020112
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]7.9e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E  N+R SVF RIRP+VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        RRL  +  +EEST      TRPSAF RL +S
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.9e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E  N+R SVF RIRP+VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        RRL  +  +EEST      TRPSAF RL +S
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.1e-1049.04Show/hide
Query:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV
        ++ P   + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE  ES +    K   K K VV
Subjt:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV

Query:  EESE
        +E++
Subjt:  EESE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.9e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E  N+R SVF RIRP+VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        RRL  +  +EEST      TRPSAF RL +S
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.1e-1049.04Show/hide
Query:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV
        ++ P   + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE  ES +    K   K K VV
Subjt:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV

Query:  EESE
        +E++
Subjt:  EESE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]7.9e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E  N+R SVF RIRP+VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        RRL  +  +EEST      TRPSAF RL +S
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]7.9e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E  N+R SVF RIRP+VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        RRL  +  +EEST      TRPSAF RL +S
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.1e-1049.04Show/hide
Query:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV
        ++ P   + +K+NPL+      S +     +PDVMSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE  ES +    K   K K VV
Subjt:  LQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSRE-EESKKGK--KKSRKSKPVV

Query:  EESE
        +E++
Subjt:  EESE

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein4.2e-2945.21Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+++P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  KE+E   +R S F RI P VAR  VF+RL + E E +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFSSLDVTRPSVFQRL-----------SVTTRRNQKEQPASSTSHRLQHED
        +RL M+  +E+        TRPSAF RL+M+  +      ++   RP +F RL           S+ T++ +    AS    R++H D
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFSSLDVTRPSVFQRL-----------SVTTRRNQKEQPASSTSHRLQHED

A0A5A7UD46 Uncharacterized protein3.0e-2752.67Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +E D  +E+E  ++R S F RI P VARA VF++L + E E +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        +RL ++  EE+        T+PSAF RL+++
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

A0A5A7UMY2 Reverse transcriptase domain-containing protein3.6e-2854.2Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E+E  N+R S F RI P VARA VF+RL + E + +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        +RL ++  EE+        T+PSAF RL+++
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

A0A5D3BSG5 Uncharacterized protein8.8e-2752.67Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E E  ++R S F RI P VAR  VF+RL + E E +  Q T+N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        +RL ++  EE+        T+PSAF RL+++
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMS

A0A5D3DXC7 Reverse transcriptase domain-containing protein2.3e-2744.86Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E+E  N+R S F RI P VARA VF+RL + E E +  Q T+N  + SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAF

Query:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFSSLDVTRPSVFQRLS-----VTTRRNQKEQPASSTS-----HRLQH
        +RL ++  EE+        T+PSAF RL+++  +   T       R  +  RL      V T  +   +   STS     HR++H
Subjt:  RRLNMSIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFSSLDVTRPSVFQRLS-----VTTRRNQKEQPASSTS-----HRLQH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCGCGCCTCTGGAAGAGGCGCAACACTTTGTCGTTTTCCGGGTCGCGCCTCTCCAAGAGGCGTGACATTCGCAAACCAACGGAACGAAAAGCGGACGAAACGGAA
GGAAACGGACGGAAACGGACGGAAGGAGACGCGGATGACGAAGAGGTGGAAACCGCACAAAACTCTGCAGCTGCCAGCTGTCCATGTTGCAGTCAAAGACAACCCACTGT
TCGAATCTGTCGTTCCAACGTCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAA
AGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGAAGAAAGTAAGAAAGGAAAAAAGAA
GTCAAGGAAGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCCCGATGATAGTAAAG
AGGAGGCACTTGAAACTGTCACGTGTCACGTTGTGGACGTGGGGGAAGATGATGACGTCCTAGCTAGCTCCTCGGGAGTGGCGGCAGAGTCACAAGCAGATGCAAGGAAG
GAAGTTGTTGAGAATAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAGAAAAGGGAA
GGCGAAAGTGGCAGACATAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGTCAACAAACGAGCTTCTGTTTTTAGGCGCATCAGGCCAACAG
TTGCTCGTGCTTCAGTATTTCAAAGATTAATTGTGAATGAAACAGAAGAAGAAAGCGTACAGCCTACCAATAACACCACGCGACCGTCAGCTTTTCGAAGGTTAAATATG
TCCATTGGGGAAGAAGAGAGTACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATTTTCAAGTCT
AGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAAACCAAAAAGAGCAGCCTGCTTCGTCAACTTCTCACCGACTTCAACATGAAGAC
mRNA sequenceShow/hide mRNA sequence
ATGTGTCGCGCCTCTGGAAGAGGCGCAACACTTTGTCGTTTTCCGGGTCGCGCCTCTCCAAGAGGCGTGACATTCGCAAACCAACGGAACGAAAAGCGGACGAAACGGAA
GGAAACGGACGGAAACGGACGGAAGGAGACGCGGATGACGAAGAGGTGGAAACCGCACAAAACTCTGCAGCTGCCAGCTGTCCATGTTGCAGTCAAAGACAACCCACTGT
TCGAATCTGTCGTTCCAACGTCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAA
AGGAAACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGAAGAAAGTAAGAAAGGAAAAAAGAA
GTCAAGGAAGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCCCGATGATAGTAAAG
AGGAGGCACTTGAAACTGTCACGTGTCACGTTGTGGACGTGGGGGAAGATGATGACGTCCTAGCTAGCTCCTCGGGAGTGGCGGCAGAGTCACAAGCAGATGCAAGGAAG
GAAGTTGTTGAGAATAAGAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAGAAAAGGGAA
GGCGAAAGTGGCAGACATAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGTCAACAAACGAGCTTCTGTTTTTAGGCGCATCAGGCCAACAG
TTGCTCGTGCTTCAGTATTTCAAAGATTAATTGTGAATGAAACAGAAGAAGAAAGCGTACAGCCTACCAATAACACCACGCGACCGTCAGCTTTTCGAAGGTTAAATATG
TCCATTGGGGAAGAAGAGAGTACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATTTTCAAGTCT
AGATGTGACTCGACCATCAGTTTTTCAGAGGTTAAGTGTTACCACGAGAAGAAACCAAAAAGAGCAGCCTGCTTCGTCAACTTCTCACCGACTTCAACATGAAGAC
Protein sequenceShow/hide protein sequence
MCRASGRGATLCRFPGRASPRGVTFANQRNEKRTKRKETDGNGRKETRMTKRWKPHKTLQLPAVHVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEME
RKLNLLMKAVDERDLEIAYLKNQLQSREEESKKGKKKSRKSKPVVEESEDFFCPPQPITLAEYFPRSFPDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAESQADARK
EVVENKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENVNKRASVFRRIRPTVARASVFQRLIVNETEEESVQPTNNTTRPSAFRRLNM
SIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFSSLDVTRPSVFQRLSVTTRRNQKEQPASSTSHRLQHED