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Spg020128 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020128
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:28784076..28790569
RNA-Seq ExpressionSpg020128
SyntenySpg020128
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7810508.1 putative ribonuclease H protein [Senna tora]4.8e-0532.41Show/hide
Query:  GGIRWILCDSDGSPISFCLKQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYCP
        G I  ++ D++G  I+   K+I   +++  +EALA++EG+      +  +   + VE DA+ V++LL G GL+ + +  I+E I +L L   +V F +  
Subjt:  GGIRWILCDSDGSPISFCLKQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYCP

Query:  RNQNTVAH
        R+ N VAH
Subjt:  RNQNTVAH
TXG56118.1 hypothetical protein EZV62_017431 [Acer yangbiense]8.1e-0536.67Show/hide
Query:  KQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLK-LGNVEFCYCPRNQNTVAH
        K  N  I+ ++ E LAI +G   ++ A+ EN + +IVESD  N INL  G  L   ++ NI + I   + +   N+  C+ PR+ N VAH
Subjt:  KQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLK-LGNVEFCYCPRNQNTVAH
XP_023914280.1 uncharacterized protein LOC112025826 [Quercus suber]9.0e-0430.7Show/hide
Query:  MGGIRWILCDSDGSPISFCLKQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYC
        + G+  I+ D  G  I F  ++I   +++ ++EA A    +T +  A     S LI+E D+E VIN L  +   L K  +++E   S++     V+FC+ 
Subjt:  MGGIRWILCDSDGSPISFCLKQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYC

Query:  PRNQNTVAHCCEHH
         R  N VAH    H
Subjt:  PRNQNTVAHCCEHH
TrEMBL top hitse value%identityAlignment
A0A5C7HH69 RNase H domain-containing protein3.9e-0536.67Show/hide
Query:  KQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLK-LGNVEFCYCPRNQNTVAH
        K  N  I+ ++ E LAI +G   ++ A+ EN + +IVESD  N INL  G  L   ++ NI + I   + +   N+  C+ PR+ N VAH
Subjt:  KQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLK-LGNVEFCYCPRNQNTVAH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGTATAAGATGGATCCTTTGTGACTCTGATGGGTCCCCGATTTCTTTCTGCCTGAAGCAAATTAATCAGAAAATTAATATGGATTCCATGGAGGCGTTAGCTAT
ATGGGAAGGCCTCACCTGCATTTACGGCGCTGTCGGCGAGAATCATTCGCTCCTGATTGTAGAATCGGATGCAGAAAATGTTATCAATCTGCTTACTGGAAAAGGCTTGG
ACCTCACGAAGATTAAGAACATCGTGGAAGCCATTGATTCCCTTTCATTGAAGTTGGGCAATGTTGAATTCTGCTATTGCCCTAGAAATCAAAACACAGTAGCCCACTGT
TGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGAGAGAAGTTGAAGAGGATCT
GAACTACGATCTTCAAGGATCTGGACTTCGTTCTTCAGTTCTGTGTTGGGATTTGAAGATGATCGGAGCCTTGTTCTTCAGTTCTGCAGCTGGATTTGATGAGGATCTGA
GCTTCGATCTTCGGTTTTGCAGAATGAGCTTCAATCTTCGGTTTCTTTTGAGAGCTTTCTCTCCTTCCTTTCTTTCTGCCCTCCCCAAATGGAACTCTTTTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGTATAAGATGGATCCTTTGTGACTCTGATGGGTCCCCGATTTCTTTCTGCCTGAAGCAAATTAATCAGAAAATTAATATGGATTCCATGGAGGCGTTAGCTAT
ATGGGAAGGCCTCACCTGCATTTACGGCGCTGTCGGCGAGAATCATTCGCTCCTGATTGTAGAATCGGATGCAGAAAATGTTATCAATCTGCTTACTGGAAAAGGCTTGG
ACCTCACGAAGATTAAGAACATCGTGGAAGCCATTGATTCCCTTTCATTGAAGTTGGGCAATGTTGAATTCTGCTATTGCCCTAGAAATCAAAACACAGTAGCCCACTGT
TGTGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACTTCTAGAGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTCTCTGAGAGAGAAGTTGAAGAGGATCT
GAACTACGATCTTCAAGGATCTGGACTTCGTTCTTCAGTTCTGTGTTGGGATTTGAAGATGATCGGAGCCTTGTTCTTCAGTTCTGCAGCTGGATTTGATGAGGATCTGA
GCTTCGATCTTCGGTTTTGCAGAATGAGCTTCAATCTTCGGTTTCTTTTGAGAGCTTTCTCTCCTTCCTTTCTTTCTGCCCTCCCCAAATGGAACTCTTTTTATTGA
Protein sequenceShow/hide protein sequence
MGGIRWILCDSDGSPISFCLKQINQKINMDSMEALAIWEGLTCIYGAVGENHSLLIVESDAENVINLLTGKGLDLTKIKNIVEAIDSLSLKLGNVEFCYCPRNQNTVAHC
CEHHHYGYTGMTLRLLEAGDLWEPLGEFSEREVEEDLNYDLQGSGLRSSVLCWDLKMIGALFFSSAAGFDEDLSFDLRFCRMSFNLRFLLRAFSPSFLSALPKWNSFY