; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020151 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020151
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold1:23304680..23306838
RNA-Seq ExpressionSpg020151
SyntenySpg020151
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]8.6e-4655.68Show/hide
Query:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY
        LL    S   S   E      MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   +IQVTP LE  V ILK+QY
Subjt:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY

Query:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT
          I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR + NK F YF DL IVFG+D+A G     P E+ +
Subjt:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-5065.97Show/hide
Query:  MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERK
        MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERK
Subjt:  MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERK

Query:  CIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG
        CI+AEKSVFDDWV+ HP+ARG+ NK F+YF DL IVFG+DKA G
Subjt:  CIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]8.6e-4655.68Show/hide
Query:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY
        LL    S   S   E      MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   +IQVTP LE  V ILK+QY
Subjt:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY

Query:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT
          I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR + NK F YF DL IVFG+D+A G     P E+ +
Subjt:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]5.2e-5166.21Show/hide
Query:  NMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDER
        NMAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ER
Subjt:  NMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDER

Query:  KCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG
        KCI+AEKSVFDDWV+ HP+ARG+ NK F+YF DL IVFG+DKA G
Subjt:  KCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG

XP_024022021.1 uncharacterized protein LOC112091787 [Morus notabilis]8.6e-4652.47Show/hide
Query:  NMASSTSKA--RKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWND
        NMA     A  RKH WT++ED  LV+CL  +  +G WK DN TF+ G+LQQ+ K+M EK+P+C ++  P ++ RV ILK+QY AI EM+GP  SGFGWND
Subjt:  NMASSTSKA--RKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWND

Query:  ERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVATDLDK
        + KC+  EK VFD+WV+ HP A+G+RNK F Y D+L +VFG D+ANG+GA+   ++  D+DK
Subjt:  ERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVATDLDK

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like2.5e-5166.21Show/hide
Query:  NMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDER
        NMAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ER
Subjt:  NMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDER

Query:  KCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG
        KCI+AEKSVFDDWV+ HP+ARG+ NK F+YF DL IVFG+DKA G
Subjt:  KCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein4.2e-4655.68Show/hide
Query:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY
        LL    S   S   E      MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   +IQVTP LE  V ILK+QY
Subjt:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY

Query:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT
          I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR + NK F YF DL IVFG+D+A G     P E+ +
Subjt:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT

A0A5D3BC95 Retrotransposon protein1.3e-5065.97Show/hide
Query:  MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERK
        MAS+ SKA KH WT+++D+ LV+CL QLV+ GGW+ +NETF+  +L QV KLMKEK+PR +IQVT  LE RV  LK+QY AI +MMGP CS FGWN+ERK
Subjt:  MASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERK

Query:  CIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG
        CI+AEKSVFDDWV+ HP+ARG+ NK F+YF DL IVFG+DKA G
Subjt:  CIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG

A0A5D3DBP2 Retrotransposon protein1.8e-4454.48Show/hide
Query:  SSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCI
        S++++A +H+WT  E+  LV+CL +LV  GGWK DN TFR G+L Q++++M EKLP C ++ T  ++ R+  LKR + AI EM GP CSGFGWNDE KCI
Subjt:  SSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGWNDERKCI

Query:  KAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA
         AEK +FD+WVR HP A+G+ NK FSY+D+L  VFG+D+A G  A
Subjt:  KAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein4.2e-4655.68Show/hide
Query:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY
        LL    S   S   E      MAS  SK  KH WT++EDE LV+CL QLV+ G W+VDN TF+ G+L QV KLMKEK+   +IQVTP LE  V ILK+QY
Subjt:  LLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQY

Query:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT
          I EMMGP CSGF WN ERKCI+AEKSV +DWV+ H +AR + NK F YF DL IVFG+D+A G     P E+ +
Subjt:  GAIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVAT

SwissProt top hitse value%identityAlignment
O82368 Uncharacterized protein At2g298801.7e-0726.32Show/hide
Query:  NMASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGW
        + A  TSK +K      W+  E   L   L   ++  GW+  N T     +++ +  +  K  +C+   T  L  R+  +K++Y     +     SGFGW
Subjt:  NMASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGW

Query:  NDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA
        +   K   A   V+  ++  HP+   MR  +F  F+DL ++F    A G  A
Subjt:  NDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA

Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein6.0e-0535.85Show/hide
Query:  GFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG
        GF W++ R  I A+ +V+D +++ HP AR  R KS   ++DL  +F      G
Subjt:  GFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANG

AT2G29880.1 unknown protein1.2e-0826.32Show/hide
Query:  NMASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGW
        + A  TSK +K      W+  E   L   L   ++  GW+  N T     +++ +  +  K  +C+   T  L  R+  +K++Y     +     SGFGW
Subjt:  NMASSTSKARKH----IWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCSGFGW

Query:  NDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA
        +   K   A   V+  ++  HP+   MR  +F  F+DL ++F    A G  A
Subjt:  NDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGA

AT4G02210.1 unknown protein1.7e-0722.38Show/hide
Query:  MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFG
        M+S     R + +WT   D+  ++ + + V+ G  + ++  F     ++  K M      C         Y   +LK ++  +  +     +     GF 
Subjt:  MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFG

Query:  WNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVF
        W+D R+ + A+  V+D+++++HP +R  R KS   + DL +V+
Subjt:  WNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVF

AT4G02210.2 unknown protein1.7e-0722.38Show/hide
Query:  MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFG
        M+S     R + +WT   D+  ++ + + V+ G  + ++  F     ++  K M      C         Y   +LK ++  +  +     +     GF 
Subjt:  MASSTSKAR-KHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYGAIVEMMGPTCS-----GFG

Query:  WNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVF
        W+D R+ + A+  V+D+++++HP +R  R KS   + DL +V+
Subjt:  WNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVF

AT5G27260.1 unknown protein6.7e-1228.03Show/hide
Query:  MASSTSKARK----HIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEY-----RVTILKRQYGAIVEMMGPTCS
        M  S  K RK    + W+  E ++LVQ L + +    W+  N T         L +  + +P  + +   +  Y     R+  LK QY + +++     S
Subjt:  MASSTSKARK----HIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEY-----RVTILKRQYGAIVEMMGPTCS

Query:  GFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGAL
        GFGW+   K   A   V+ D+++ HP+ + +R  +F +FD+L I+FG+  A G+ A+
Subjt:  GFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACTATCACGAATCCTAGAGGCCTTCTTTCTTCATACTCTAGTCCAGTCAGGTCAGTGCACCTTGAAGCACGTCACCTTCGTAACATGGCATCATCCACTTCGAA
AGCCCGTAAACATATTTGGACATCAATGGAGGATGAAGTTTTGGTCCAATGCCTGTTTCAGTTAGTTCAAGCAGGTGGTTGGAAGGTTGACAACGAGACCTTTAGATCGG
GGCATTTGCAACAAGTACTGAAGTTGATGAAAGAGAAACTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTATAGAGTGACGATCCTAAAAAGGCAATACGGT
GCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGGTTTGGGTGGAATGATGAACGAAAGTGCATTAAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAGGGTACACCC
ACATGCCCGAGGTATGAGGAACAAGTCATTCTCCTACTTCGACGACCTAGTAATTGTGTTCGGGAAGGATAAGGCTAATGGAGAAGGAGCTTTGATTCCAAAAGAAGTGG
CTACCGATCTTGATAAGTGTTGCATGTGTATCTTGGGAAGGCAACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACTATCACGAATCCTAGAGGCCTTCTTTCTTCATACTCTAGTCCAGTCAGGTCAGTGCACCTTGAAGCACGTCACCTTCGTAACATGGCATCATCCACTTCGAA
AGCCCGTAAACATATTTGGACATCAATGGAGGATGAAGTTTTGGTCCAATGCCTGTTTCAGTTAGTTCAAGCAGGTGGTTGGAAGGTTGACAACGAGACCTTTAGATCGG
GGCATTTGCAACAAGTACTGAAGTTGATGAAAGAGAAACTGCCAAGATGCGACATACAAGTGACCCCGACCTTGGAGTATAGAGTGACGATCCTAAAAAGGCAATACGGT
GCCATTGTCGAAATGATGGGTCCCACCTGCAGTGGGTTTGGGTGGAATGATGAACGAAAGTGCATTAAGGCGGAGAAATCAGTCTTTGATGATTGGGTCAGGGTACACCC
ACATGCCCGAGGTATGAGGAACAAGTCATTCTCCTACTTCGACGACCTAGTAATTGTGTTCGGGAAGGATAAGGCTAATGGAGAAGGAGCTTTGATTCCAAAAGAAGTGG
CTACCGATCTTGATAAGTGTTGCATGTGTATCTTGGGAAGGCAACCATGA
Protein sequenceShow/hide protein sequence
MSTITNPRGLLSSYSSPVRSVHLEARHLRNMASSTSKARKHIWTSMEDEVLVQCLFQLVQAGGWKVDNETFRSGHLQQVLKLMKEKLPRCDIQVTPTLEYRVTILKRQYG
AIVEMMGPTCSGFGWNDERKCIKAEKSVFDDWVRVHPHARGMRNKSFSYFDDLVIVFGKDKANGEGALIPKEVATDLDKCCMCILGRQP