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Spg020173 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020173
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:26630009..26633289
RNA-Seq ExpressionSpg020173
SyntenySpg020173
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1853.51Show/hide
Query:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN   + SG+ +T  I PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++F+V  G    + 
Subjt:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1662.79Show/hide
Query:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.0e-1649.12Show/hide
Query:  GNLIFISSGQ-EETGYIPLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN + + +G+ ++T    L TLSVLRDN+AV       IELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++FNV  G    + 
Subjt:  GNLIFISSGQ-EETGYIPLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.3e-1853.51Show/hide
Query:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN   + SG+ +T  I PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++F+V  G    + 
Subjt:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1662.79Show/hide
Query:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase1.6e-1853.51Show/hide
Query:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN   + SG+ +T  I PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++F+V  G    + 
Subjt:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

A0A5A7VMG9 Reverse transcriptase8.7e-1762.79Show/hide
Query:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

A0A5D3CJX3 CCHC-type domain-containing protein1.9e-1649.12Show/hide
Query:  GNLIFISSGQ-EETGYIPLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN + + +G+ ++T    L TLSVLRDN+AV       IELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++FNV  G    + 
Subjt:  GNLIFISSGQ-EETGYIPLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

A0A5D3DSY7 Putative Retrotransposon protein1.6e-1853.51Show/hide
Query:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE
        GN   + SG+ +T  I PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY ESVH+             ++++F+V  G    + 
Subjt:  GNLIFISSGQEETGYI-PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLE

Query:  EDDVRWLHAIFRAK
         DDV WLHA+FRAK
Subjt:  EDDVRWLHAIFRAK

A0A5D3DX39 Reverse transcriptase8.7e-1762.79Show/hide
Query:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        PL TLSVLRDNDAV     VEIELPVPDTLPTS ESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  PLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAA
CGATGCTGTCGTGAGTGCTGGGCGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGT
ATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGTGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAG
CTAGAGCAAACTATGGATTTTGGTGATAAAAGTGCCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAGGGGAATCAAAAGAGGTCAATTATGAAGAAAA
AGGTCCAAAAAGAAATGTGGAGAGGCCCAAATTGAAGCCCAAATCCATAGTTGAAAGATCTGAAAAACGCCTAGCGTTGAGACGCTGTAAGGACAGCGTCGCGACGCTGT
CCATTTCTTGGCCGGCAAGTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGCCAAGAGGAAACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAA
CGATGCTGTCGTGAGTGCTGGGCGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGAACAAGTTCCAGTACGTGGGTGGAGTTGT
ATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGTGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAG
CTAGAGCAAACTATGGATTTTGGTGATAAAAGTGCCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAGGGGAATCAAAAGAGGTCAATTATGAAGAAAA
AGGTCCAAAAAGAAATGTGGAGAGGCCCAAATTGAAGCCCAAATCCATAGTTGAAAGATCTGAAAAACGCCTAGCGTTGAGACGCTGTAAGGACAGCGTCGCGACGCTGT
CCATTTCTTGGCCGGCAAGTCGATGA
Protein sequenceShow/hide protein sequence
MFGAILGKSVGNLIFISSGQEETGYIPLLTLSVLRDNDAVVSAGRVEIELPVPDTLPTSVESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVSLEEDDVRWLHAIFRAK
LEQTMDFGDKSAQNEAIQAQFPCLGQGESKEVNYEEKGPKRNVERPKLKPKSIVERSEKRLALRRCKDSVATLSISWPASR