CuGenDBv2

Gene ID	Spg020195
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosome production factor 1-like
Genome location	scaffold1:27810429..27813149
RNA-Seq Expression	Spg020195
Synteny	Spg020195
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7027746.1 Ribosome production factor 1 [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-30

92.94

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK+RD+IPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR  PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

1.3e-31

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

XP_022156150.1 ribosome production factor 1-like [Momordica charantia]

1.3e-31

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

XP_022943997.1 ribosome production factor 1 [Cucurbita moschata]

1.5e-30

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK+RD++PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR  PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

XP_022971273.1 ribosome production factor 1 [Cucurbita maxima]

1.1e-30

92.94

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK+RD+IPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR  PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B7C9 ribosome production factor 1 isoform X2

6.6e-29

89.41

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK++ IIPSMIKNKEKRAEVHANLK+QKKLEKRKRAKARDAAEKQALELGEE PPR +PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

A0A6J1DPH5 ribosome production factor 1-like

6.4e-32

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

A0A6J1DT48 ribosome production factor 1-like

6.4e-32

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEEKK  RDIIPSMIKNKEKR EVHANLK QKKLEKRKRAKARDA+EKQALELGEEPPPRM+PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

A0A6J1FUK1 ribosome production factor 1

7.1e-31

91.76

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK+RD++PSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR  PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

A0A6J1I6C8 ribosome production factor 1

5.4e-31

92.94

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Query:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        MGEE KK+RD+IPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPR  PRTIENTREVDETVCKPDDEE+
Subjt:  MGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

SwissProt top hits

e value

%identity

Alignment

Q6IQU6 Ribosome production factor 1

1.9e-04

41.57

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Query:  EEKKKSRDIIP-----SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEVS
        EEK  S    P     S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP+ VP+TIEN R  DET   P+DEEV+
Subjt:  EEKKKSRDIIP-----SMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEVS

Q8AVP1 Ribosome production factor 1

1.1e-04

45.45

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Query:  SMIKNKEKRAEVHANLKNQKKLEK----RKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEVS
        S IKNK++R  +   LK +K+ EK    +KR K R+A       LG++ PP+ VP+TIEN R  DET   P DEEV+
Subjt:  SMIKNKEKRAEVHANLKNQKKLEK----RKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEVS

Arabidopsis top hits

e value

%identity

Alignment

AT4G01560.1 Ribosomal RNA processing Brix domain protein

2.4e-23

68.75

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Query:  KKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV
        +K   I+PSMIKNK+KR++V+A  K++KKLEK+K+ +ARDAAEK+ALELGEEPP +M+P+TIENTRE DETVC+PDDEE+
Subjt:  KKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEEPPPRMVPRTIENTREVDETVCKPDDEEV

Sequences

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CDS sequence

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ATGCTTCAGTCAACAAATACAACTATTCTGGAAAATTTCTCGGGACTGTTAAAGTCGCCGGCGTGGGTCTTCGCGGCAATCGCCGTGGGTCTTGATTCGGAGTCGATTTC
ACGCTACGTTAGGTCTTTGCTCTGCGCCGTTGTGAGGCTCGGGTTTGTTCATCCGTGGGTTTCATTACAGGTGATGGGAGAGGAGAAGAAGAAGAGCAGGGATATAATCC
CATCAATGATAAAGAACAAGGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGCAAGAGGGCCAAGGCTCGTGATGCTGCTGAGAAG
CAAGCTCTTGAACTTGGAGAAGAACCTCCTCCTAGGATGGTTCCTCGCACCATTGAGAACACAAGGGAGGTTGATGAGACGGTTTGCAAACCTGATGATGAAGAGGTATC
CGACAATGTCGTCGTGGTTGAGATCGATTCCGGCGACGGTGCGGATCTTGGGATTGTCCAATGTAGGAGCACAGTAGACGCTGGTGTAGCTGCAGACATCAGATCCGAGC
CAATTGACGGTTTGATTCAGAGGGTCAGACAAAGTGGCGAGTTTCCAAGCCTGAAGCGCAATGTAGGCGTTTCTGGTCCTTTCATTTTCGAAGACGAGAGATGGGTCGAC
GGTGACATGCTCTCCACGGTCGCCAAACTCGTCTCTGTAGTAGAGAAGTTGGCGGTGGCAGATGTAGAAAGCTTCGGTGTCGGAGAGGGCACCATGGCCGACGGTGGGGA
GGGCGGCGGCGAGGCGGAGGAGGAAGAGGAGGGAGAGGTTGAAAAAGAAGATGAAATTGGAGTTGGGATACATTTGGAATGA

mRNA sequence

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Protein sequence

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MLQSTNTTILENFSGLLKSPAWVFAAIAVGLDSESISRYVRSLLCAVVRLGFVHPWVSLQVMGEEKKKSRDIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEK
QALELGEEPPPRMVPRTIENTREVDETVCKPDDEEVSDNVVVVEIDSGDGADLGIVQCRSTVDAGVAADIRSEPIDGLIQRVRQSGEFPSLKRNVGVSGPFIFEDERWVD
GDMLSTVAKLVSVVEKLAVADVESFGVGEGTMADGGEGGGEAEEEEEGEVEKEDEIGVGIHLE

Spg020195 (gene) of Sponge gourd (cylindrica) v1 genome