; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020204 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020204
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:24284278..24287103
RNA-Seq ExpressionSpg020204
SyntenySpg020204
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041559.1 hypothetical protein E6C27_scaffold93G00150 [Cucumis melo var. makuwa]1.8e-2848.95Show/hide
Query:  DEDKGSTIMTQEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSE
        D + GS   ++E + S EI +RTSVF RI+PSTTR SVFQR+SM   EEE Q  T   TR S F+RL++S SK++RPST+ FDRLK+ +DQ++R++ + +
Subjt:  DEDKGSTIMTQEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSE

Query:  VKLFDEVNNDKKLHSTTPSRMKRKFSVLINTESLHSPCFKFGVPFAQSLTSNPLHVSSLQDRHVTCSKFDTSLHLQR-VAIERLRFHFTF
         K F E N+D K+HS  PSRMKRK SV INTE   SP F+      Q+L        S    H+ CS+ D  LHL   VA ER+   FTF
Subjt:  VKLFDEVNNDKKLHSTTPSRMKRKFSVLINTESLHSPCFKFGVPFAQSLTSNPLHVSSLQDRHVTCSKFDTSLHLQR-VAIERLRFHFTF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.0e-2961.48Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EEE Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+HS  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-2859.84Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EE+ Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+H+  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-2854.79Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   +EE +  TST TR SAF+RL++S SK+HRPST VFDRLK+T+DQ++R++   + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE--SLHSPCFKFGVPFAQSLTSNPL
         K+H+  PSRMKRK SV IN E   LH      G P  Q L S+ +
Subjt:  KKLHSTTPSRMKRKFSVLINTE--SLHSPCFKFGVPFAQSLTSNPL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-2859.84Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EE+ Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+H+  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

TrEMBL top hitse value%identityAlignment
A0A5A7TJM9 Uncharacterized protein8.6e-2948.95Show/hide
Query:  DEDKGSTIMTQEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSE
        D + GS   ++E + S EI +RTSVF RI+PSTTR SVFQR+SM   EEE Q  T   TR S F+RL++S SK++RPST+ FDRLK+ +DQ++R++ + +
Subjt:  DEDKGSTIMTQEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSE

Query:  VKLFDEVNNDKKLHSTTPSRMKRKFSVLINTESLHSPCFKFGVPFAQSLTSNPLHVSSLQDRHVTCSKFDTSLHLQR-VAIERLRFHFTF
         K F E N+D K+HS  PSRMKRK SV INTE   SP F+      Q+L        S    H+ CS+ D  LHL   VA ER+   FTF
Subjt:  VKLFDEVNNDKKLHSTTPSRMKRKFSVLINTESLHSPCFKFGVPFAQSLTSNPLHVSSLQDRHVTCSKFDTSLHLQR-VAIERLRFHFTF

A0A5A7TQ06 Retrotransposon gag protein3.9e-2961.48Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EEE Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+HS  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

A0A5A7UI09 Retrotransposon gag protein2.5e-2859.84Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EE+ Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+H+  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

A0A5A7UM99 Ty3-gypsy retrotransposon protein1.1e-2854.79Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   +EE +  TST TR SAF+RL++S SK+HRPST VFDRLK+T+DQ++R++   + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE--SLHSPCFKFGVPFAQSLTSNPL
         K+H+  PSRMKRK SV IN E   LH      G P  Q L S+ +
Subjt:  KKLHSTTPSRMKRKFSVLINTE--SLHSPCFKFGVPFAQSLTSNPL

A0A5D3CCI8 Retrotransposon gag protein2.5e-2859.84Show/hide
Query:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND
        +E D S EI++RTSVFDRI+P TTR SVFQR+SM   EE+ Q  TST  R SAF+RL++S SK+HRPST+ FDRLK+T+DQ++R++ + + K F E N+D
Subjt:  QEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLKVTSDQRERKVDNSEVKLFDEVNND

Query:  KKLHSTTPSRMKRKFSVLINTE
         K+H+  PSRMKRK SV INTE
Subjt:  KKLHSTTPSRMKRKFSVLINTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTATAGCTATTTCGTTTCATCATGAGGTATCAGGAGACAAATCTCAAGATGTTAATCTTATCAGCGATGAAGATAAAGGAAGTACTATCATGACTCAAGAAGA
TGACGGTTCAAAGGAAATCGAGAGAAGAACTTCTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACCTTCGGTCTTCCAAAGAATGAGTATGGGTGCAATAGAAGAAG
AAACTCAAAGCTTGACGTCCACCATCACTCGACATTCAGCCTTCCAAAGGCTAAACGTCTCTGCATCAAAAGAACATCGACCTTCAACAACTGTTTTTGATCGCCTCAAA
GTAACAAGCGACCAACGTGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAGTAAACAATGACAAGAAGCTTCACAGTACCACGCCGTCACGTATGAAGAG
GAAGTTTTCTGTTCTCATAAACACAGAAAGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTCCGTTTGCGCAAAGTTTGACGTCTAACCCCCTCCATGTTAGCTCGCTCC
AAGATCGACACGTCACTTGCTCCAAGTTTGATACCTCACTTCATCTTCAAAGGGTGGCGATTGAAAGGCTTCGCTTCCACTTCACCTTCAAATCTTCAAAGGGGGCAGTT
GAAAGCTTCACTTCACTTCAAATATTGACAGTCAGCAGCTTTGCTTCATCTTCAAAGGATACTGCAGTCATCAAAGTGACTGGTCTAGACAGGGGGGAAGTCACTGCAAT
TGAAGTTGATGACGACCATTGTAGGCGAGCGAGTCGGGTGACCACCCGCGCAAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAAATGA
AGTTGATGACGACCATTGTAGGCGAGTCTGGAGGTGAAGTCACTGCAAATGAAGTTGATGACGACCGTTGTTGGCAAGCGAGTCTGGTGACCACCTCTGAAGGATACTAC
AGTCATCAAAGTGACTGGTCTAGACAGATGGTGAAATCACTGCAATTGAAGTTGATGACGACCGTTGTAGACGAGTCTGGTGACCACCCCTGCAGGATACTACAGTCATC
AAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTATAGCTATTTCGTTTCATCATGAGGTATCAGGAGACAAATCTCAAGATGTTAATCTTATCAGCGATGAAGATAAAGGAAGTACTATCATGACTCAAGAAGA
TGACGGTTCAAAGGAAATCGAGAGAAGAACTTCTGTCTTTGACCGCATTGAGCCTTCAACTACTCGACCTTCGGTCTTCCAAAGAATGAGTATGGGTGCAATAGAAGAAG
AAACTCAAAGCTTGACGTCCACCATCACTCGACATTCAGCCTTCCAAAGGCTAAACGTCTCTGCATCAAAAGAACATCGACCTTCAACAACTGTTTTTGATCGCCTCAAA
GTAACAAGCGACCAACGTGAAAGAAAGGTGGACAATTCAGAAGTTAAATTGTTCGATGAAGTAAACAATGACAAGAAGCTTCACAGTACCACGCCGTCACGTATGAAGAG
GAAGTTTTCTGTTCTCATAAACACAGAAAGTTTGCATTCTCCATGCTTCAAGTTTGGTGTTCCGTTTGCGCAAAGTTTGACGTCTAACCCCCTCCATGTTAGCTCGCTCC
AAGATCGACACGTCACTTGCTCCAAGTTTGATACCTCACTTCATCTTCAAAGGGTGGCGATTGAAAGGCTTCGCTTCCACTTCACCTTCAAATCTTCAAAGGGGGCAGTT
GAAAGCTTCACTTCACTTCAAATATTGACAGTCAGCAGCTTTGCTTCATCTTCAAAGGATACTGCAGTCATCAAAGTGACTGGTCTAGACAGGGGGGAAGTCACTGCAAT
TGAAGTTGATGACGACCATTGTAGGCGAGCGAGTCGGGTGACCACCCGCGCAAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAAATGA
AGTTGATGACGACCATTGTAGGCGAGTCTGGAGGTGAAGTCACTGCAAATGAAGTTGATGACGACCGTTGTTGGCAAGCGAGTCTGGTGACCACCTCTGAAGGATACTAC
AGTCATCAAAGTGACTGGTCTAGACAGATGGTGAAATCACTGCAATTGAAGTTGATGACGACCGTTGTAGACGAGTCTGGTGACCACCCCTGCAGGATACTACAGTCATC
AAAGTGA
Protein sequenceShow/hide protein sequence
MEPIAISFHHEVSGDKSQDVNLISDEDKGSTIMTQEDDGSKEIERRTSVFDRIEPSTTRPSVFQRMSMGAIEEETQSLTSTITRHSAFQRLNVSASKEHRPSTTVFDRLK
VTSDQRERKVDNSEVKLFDEVNNDKKLHSTTPSRMKRKFSVLINTESLHSPCFKFGVPFAQSLTSNPLHVSSLQDRHVTCSKFDTSLHLQRVAIERLRFHFTFKSSKGAV
ESFTSLQILTVSSFASSSKDTAVIKVTGLDRGEVTAIEVDDDHCRRASRVTTRARYYSHQSDWSRQVVKSLQMKLMTTIVGESGGEVTANEVDDDRCWQASLVTTSEGYY
SHQSDWSRQMVKSLQLKLMTTVVDESGDHPCRILQSSK