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Spg020205 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020205
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold1:28209030..28212016
RNA-Seq ExpressionSpg020205
SyntenySpg020205
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144030.1 protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia]4.2e-0951.61Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDY----QVLGFSEHI
        DG+L G V+ ++RTCSCREFDYF++PCSHAIA  +  NI+PY++C   Y     V+ ++E I
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDY----QVLGFSEHI

XP_022148136.1 uncharacterized protein LOC111016889 [Momordica charantia]9.3e-0951.61Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI
        DG+L G V+ ++RTCSCREFDYF++PCSHAIA  +  NI+PY +C   Y     V+ ++E I
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI

XP_038890792.1 uncharacterized protein LOC120080248 [Benincasa hispida]7.6e-1166.67Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV
        DG LGGRVNIH RTC+CR+FDY+E+ CSHAIAAC   NID  S CS  Y +
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV

XP_038895917.1 uncharacterized protein LOC120084090 [Benincasa hispida]2.9e-1062.75Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV
        DG L GR NIHTR C+C +FDY+E+PCSH IAAC   NIDP S+CS  Y +
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV

XP_038904373.1 uncharacterized protein LOC120090731 [Benincasa hispida]1.5e-1166.67Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV
        +G L GRVNIHTRTC+CR+FDY+++PCSHAIAAC   NIDP S+CS  Y +
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV

TrEMBL top hitse value%identityAlignment
A0A6J1CQH9 protein FAR1-RELATED SEQUENCE 4-like2.0e-0951.61Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDY----QVLGFSEHI
        DG+L G V+ ++RTCSCREFDYF++PCSHAIA  +  NI+PY++C   Y     V+ ++E I
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDY----QVLGFSEHI

A0A6J1D278 uncharacterized protein LOC1110166235.9e-0944.29Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV-LGFSEHIEEVYAAKNVES
        DGS   RVN++++TCSC++FDY+++PCSHAIAA V  N++ Y++CS  Y++    + + E +Y   N E+
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQV-LGFSEHIEEVYAAKNVES

A0A6J1D4G8 uncharacterized protein LOC1110168894.5e-0951.61Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI
        DG+L G V+ ++RTCSCREFDYF++PCSHAIA  +  NI+PY +C   Y     V+ ++E I
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI

A0A6J1DJT1 uncharacterized protein LOC1110207155.9e-0950Show/hide
Query:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI
        DG+L G V+ ++RTC+CREFDYF++PCSHAIA  +  NI+PY++C   Y     V+ ++E I
Subjt:  DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI

A0A6J1DYC4 uncharacterized protein LOC1110256787.7e-0943.82Show/hide
Query:  EVMHASVSVAPRTSVTAPSD-------DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI
        E M+A  S + R  V    D       DG+L G V+++   CSCREFDYF++PCSHAIAA    NI+PYS+C   Y     +L ++E I
Subjt:  EVMHASVSVAPRTSVTAPSD-------DGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQ----VLGFSEHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49920.1 MuDR family transposase3.3e-0435.8Show/hide
Query:  VSVAP--RTSVTAPSDDGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQVLGFSEHIEEVYAAK
        VS+AP  +T +   S+D S  G V ++  TC+C EF   + PC HA+A C    I+P       Y V    E   + Y+AK
Subjt:  VSVAP--RTSVTAPSDDGSLGGRVNIHTRTCSCREFDYFELPCSHAIAACVYHNIDPYSICSRDYQVLGFSEHIEEVYAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAAAACTCGGTTTAAATGTATAATACTTGGTCTAAATCATGATTTCCAACATTCTGCTGAAAAACTTGGTCTCGATCCTGGTCGGGATCCTGGTTGGGATCCTGG
TCTGGATCTTGGTCTATATCCTGGTCGAAATCCTGGCCAAGATTTTCCCATGCACATCATGCCTCTTGTATGGGTTTGTTGTGGTGGGATATGGAATGAGAGTGAAAAGG
AGTACGAAGGTGGGAAGTTGAGAGGGTTTGATGTAGATGTTGGAATTACACATGTCGACTTCCTAGGCTGGTCCAAAGCTCCAGCATTTGTTATCCAAGATGACGAAGAC
CTTCATACTTTTCTGACGTGGGAAGAGGTCTCTGTAAGACCTCTCTACGTATCGACTGTGCCAAAGTTTTCGAGTAATGAGAGACATAGGTCACTTCCCATTCCATACAC
GGTATCAAATAACCCCAATCAATGTAATCCTTCCTCATCCTTCCTATATAACCAAGGACAAGATATCTCCTCCACAAACATCTCTAACCAAGGACAAAGTGCAGTAGCAT
CACTTACTCCGATGTCCAATAATATATCTGCATATAACTTGGGAGATGATGTATACCATGCTTGGGGGGAATTGAGAGATGAAGGGTTGAAAGTAGATGAAGATGATGAT
TGGAGTGTGGATAGAGATGATGAGTCAAATGTAGATGTAGATTACGATGAGGATAGAGATGATGGACTTGATGAAACAGAGGCAGATGGATATGGTCATAGGGAGGTCCC
GCCTGCTAATGCATCTGAAGCTCCACCTGTTAATGCATCTGAAGCTCCACTTGTTAATTCACCTGAGGTTATGCATGCATCAGTTTCGGTCGCCCCACGAACTTCTGTGA
CAGCTCCATCAGACGATGGGTCATTGGGTGGACGTGTCAACATACACACTAGGACATGCAGTTGTCGTGAGTTTGACTACTTCGAACTCCCATGTTCCCATGCGATTGCT
GCATGCGTGTATCATAACATTGACCCCTATTCTATTTGTTCAAGGGACTATCAGGTACTTGGTTTTAGTGAACACATTGAGGAAGTTTATGCTGCAAAGAATGTGGAAAG
TGGAGTAATGGAGCTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAAAACTCGGTTTAAATGTATAATACTTGGTCTAAATCATGATTTCCAACATTCTGCTGAAAAACTTGGTCTCGATCCTGGTCGGGATCCTGGTTGGGATCCTGG
TCTGGATCTTGGTCTATATCCTGGTCGAAATCCTGGCCAAGATTTTCCCATGCACATCATGCCTCTTGTATGGGTTTGTTGTGGTGGGATATGGAATGAGAGTGAAAAGG
AGTACGAAGGTGGGAAGTTGAGAGGGTTTGATGTAGATGTTGGAATTACACATGTCGACTTCCTAGGCTGGTCCAAAGCTCCAGCATTTGTTATCCAAGATGACGAAGAC
CTTCATACTTTTCTGACGTGGGAAGAGGTCTCTGTAAGACCTCTCTACGTATCGACTGTGCCAAAGTTTTCGAGTAATGAGAGACATAGGTCACTTCCCATTCCATACAC
GGTATCAAATAACCCCAATCAATGTAATCCTTCCTCATCCTTCCTATATAACCAAGGACAAGATATCTCCTCCACAAACATCTCTAACCAAGGACAAAGTGCAGTAGCAT
CACTTACTCCGATGTCCAATAATATATCTGCATATAACTTGGGAGATGATGTATACCATGCTTGGGGGGAATTGAGAGATGAAGGGTTGAAAGTAGATGAAGATGATGAT
TGGAGTGTGGATAGAGATGATGAGTCAAATGTAGATGTAGATTACGATGAGGATAGAGATGATGGACTTGATGAAACAGAGGCAGATGGATATGGTCATAGGGAGGTCCC
GCCTGCTAATGCATCTGAAGCTCCACCTGTTAATGCATCTGAAGCTCCACTTGTTAATTCACCTGAGGTTATGCATGCATCAGTTTCGGTCGCCCCACGAACTTCTGTGA
CAGCTCCATCAGACGATGGGTCATTGGGTGGACGTGTCAACATACACACTAGGACATGCAGTTGTCGTGAGTTTGACTACTTCGAACTCCCATGTTCCCATGCGATTGCT
GCATGCGTGTATCATAACATTGACCCCTATTCTATTTGTTCAAGGGACTATCAGGTACTTGGTTTTAGTGAACACATTGAGGAAGTTTATGCTGCAAAGAATGTGGAAAG
TGGAGTAATGGAGCTGAGATGA
Protein sequenceShow/hide protein sequence
MHKTRFKCIILGLNHDFQHSAEKLGLDPGRDPGWDPGLDLGLYPGRNPGQDFPMHIMPLVWVCCGGIWNESEKEYEGGKLRGFDVDVGITHVDFLGWSKAPAFVIQDDED
LHTFLTWEEVSVRPLYVSTVPKFSSNERHRSLPIPYTVSNNPNQCNPSSSFLYNQGQDISSTNISNQGQSAVASLTPMSNNISAYNLGDDVYHAWGELRDEGLKVDEDDD
WSVDRDDESNVDVDYDEDRDDGLDETEADGYGHREVPPANASEAPPVNASEAPLVNSPEVMHASVSVAPRTSVTAPSDDGSLGGRVNIHTRTCSCREFDYFELPCSHAIA
ACVYHNIDPYSICSRDYQVLGFSEHIEEVYAAKNVESGVMELR