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Spg020228 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020228
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationscaffold1:23065252..23067237
RNA-Seq ExpressionSpg020228
SyntenySpg020228
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]5.7e-7075.11Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL+LERKDLS+S LESSLLVCKKNSTSKEPC N KPITEPA KS                      VLGRV+DFLGVISEANKKLQ+D+K+NA
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS
        +KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCSSS SES  EESSDDSI+SD++N+DNEKSDDQNTD  NR SVKLKRS S
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS

Query:  RKISLRSKSKGKGKSKKRPKIVELS
        RK S RSKSKGKGKSKKRPKI  LS
Subjt:  RKISLRSKSKGKGKSKKRPKIVELS

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]4.4e-7075.22Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL LERKDL SS  ESSLLVCKKNSTSKEPC N KPITEPAPKSQ                     VLGRVKDFLGV+SEANKKLQ+DAKD+A
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSS-ESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSK
        EKYDIEAL+G+ESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VI L CSSSSS ES+ EESSDDSI+SDNN+DDNEKSD+QNTD GNR SVKLKR K
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSS-ESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSK

Query:  SRKISLRSKSKGKGKSKKRPKIVELS
        SRK + RS+SK KGKS KRPKI+ELS
Subjt:  SRKISLRSKSKGKGKSKKRPKIVELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]3.9e-7175.33Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL LERKDL SS LESSLLVCKKNSTSKEPC N KPITEPAPKSQ                     VLGRVKDFLGV+SEANKKLQ+DAKD+A
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS
        EKYDIEAL+GNESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VIPL C  SSSSSES+ EESSDDSI+SDNN++DNEKSD QNTD GNR SVKLKRS
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS

Query:  KSRKISLRSKSKGKGKSKKRPKIVELS
        KSR+ + RS+S+ KGKS KRPKI+ELS
Subjt:  KSRKISLRSKSKGKGKSKKRPKIVELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]3.0e-7175.33Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL LERKDL SS LESSLLVCKKNSTSKEPC N KPITEPAPKSQ                     VLGRVKDFLGV+SEANKKLQ+DAKD+A
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS
        EKYDIEAL+G+ESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VIPL C  SSSSSES+ EE+SDDSI+SDNN+DDNEKSD++NTD GNR SVKLKRS
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS

Query:  KSRKISLRSKSKGKGKSKKRPKIVELS
        KSRK + RS+SK KGKSKKRP+I+ELS
Subjt:  KSRKISLRSKSKGKGKSKKRPKIVELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]6.1e-7278.03Show/hide
Query:  RASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAEK
        R SKDLLYLERKDLSSS LESSLLVCKKNSTSKEP  N KPITEPA KS                      VLGRVKDFLGVISEANKKLQ+DAKDNAEK
Subjt:  RASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAEK

Query:  YDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKSRK
        YDIEALDGNES+VIE++LMLGIADLHTPEAVAAAES I+GNQ VIPLTC SSSSES+ EESSDDSI+S++NNDDNEKSDDQNTD  NRSSVKLKRS SRK
Subjt:  YDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKSRK

Query:  ISLRSKSKGKGKSKKRPKIVELS
         S RSKSKGK KS+KRPKI+ELS
Subjt:  ISLRSKSKGKGKSKKRPKIVELS

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein2.3e-6975.11Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR  SKDLLYLERKDLSSS LESSLLVCKKNSTSK+P  N KPITEPA KS                      VLGRVKDFLGVISEANKKLQ+D+K+NA
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS
        EKYDIEALDGNESEVI+++LMLGIADLHTPEAV AAES I+GN  VIPLTCSSS SES  EESSDDSI+SD++NDDNEKSDDQ TD  NR SVKLKRS S
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS

Query:  RKISLRSKSKGKGKSKKRPKIVELS
        RK S RSKSKGKGKSKKRPKI  LS
Subjt:  RKISLRSKSKGKGKSKKRPKIVELS

A0A1S3BJW4 uncharacterized protein LOC1034908382.8e-7075.11Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL+LERKDLS+S LESSLLVCKKNSTSKEPC N KPITEPA KS                      VLGRV+DFLGVISEANKKLQ+D+K+NA
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS
        +KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCSSS SES  EESSDDSI+SD++N+DNEKSDDQNTD  NR SVKLKRS S
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS

Query:  RKISLRSKSKGKGKSKKRPKIVELS
        RK S RSKSKGKGKSKKRPKI  LS
Subjt:  RKISLRSKSKGKGKSKKRPKIVELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF342.8e-7075.11Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL+LERKDLS+S LESSLLVCKKNSTSKEPC N KPITEPA KS                      VLGRV+DFLGVISEANKKLQ+D+K+NA
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS
        +KYDIEALDGNESEVI+++LMLGIADLHTPEAVAAAES I+GN  VIPLTCSSS SES  EESSDDSI+SD++N+DNEKSDDQNTD  NR SVKLKRS S
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKS

Query:  RKISLRSKSKGKGKSKKRPKIVELS
        RK S RSKSKGKGKSKKRPKI  LS
Subjt:  RKISLRSKSKGKGKSKKRPKIVELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X12.1e-7075.22Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL LERKDL SS  ESSLLVCKKNSTSKEPC N KPITEPAPKSQ                     VLGRVKDFLGV+SEANKKLQ+DAKD+A
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSS-ESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSK
        EKYDIEAL+G+ESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VI L CSSSSS ES+ EESSDDSI+SDNN+DDNEKSD+QNTD GNR SVKLKR K
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSS-ESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSK

Query:  SRKISLRSKSKGKGKSKKRPKIVELS
        SRK + RS+SK KGKS KRPKI+ELS
Subjt:  SRKISLRSKSKGKGKSKKRPKIVELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X11.9e-7175.33Show/hide
Query:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA
        MR ASKDLL LERKDL SS LESSLLVCKKNSTSKEPC N KPITEPAPKSQ                     VLGRVKDFLGV+SEANKKLQ+DAKD+A
Subjt:  MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNA

Query:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS
        EKYDIEAL+GNESEVIE++LMLGIADLHTPEAVAAAES I+GNQ VIPL C  SSSSSES+ EESSDDSI+SDNN++DNEKSD QNTD GNR SVKLKRS
Subjt:  EKYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTC--SSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRS

Query:  KSRKISLRSKSKGKGKSKKRPKIVELS
        KSR+ + RS+S+ KGKS KRPKI+ELS
Subjt:  KSRKISLRSKSKGKGKSKKRPKIVELS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein3.4e-2044.12Show/hide
Query:  KDLLYLERKD-LSSSFLESSLLVC---KKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAE
        KDLL LE K+  SSS ++S+LL+C    K     E     KP   P PKSQ                     +LG++K FLGV++EANKK    ++ N E
Subjt:  KDLLYLERKD-LSSSFLESSLLVC---KKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAE

Query:  KYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSD
         Y+IEAL GNESE+IEM+LMLG+ADL+TPEAV+AAE+ I G         SSS  ES  E   ++S S++
Subjt:  KYDIEALDGNESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACGTGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTTTTTAGAGTCCTCACTGCTAGTTTGTAAAAAAAATTCAACGTCCAAGGAGCC
CTGTTGGAATGGAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGCTGGAAACTTACCTCCCCAAAATGAGTTGCAAGCGTTGCTCACTTCCTTTTCACTTGTTGCAG
TATTGGGAAGAGTCAAAGACTTCTTAGGAGTGATATCAGAAGCTAATAAAAAGTTGCAAGTGGATGCAAAGGACAATGCTGAAAAGTATGATATTGAAGCACTCGATGGC
AATGAGTCAGAAGTCATTGAAATGAACCTGATGTTGGGTATCGCCGATCTTCATACACCTGAAGCTGTGGCTGCTGCTGAATCTGTAATAGTTGGTAACCAGCATGTGAT
TCCATTGACTTGTAGCAGTAGTAGTAGTGAATCTAAGCCTGAAGAGAGTAGTGATGATAGTATTAGCAGTGACAACAATAACGATGACAATGAAAAGAGTGACGATCAGA
ATACCGACAGTGGTAACAGATCGTCAGTTAAACTCAAAAGATCGAAATCTAGAAAAATCAGTCTTAGAAGTAAAAGTAAAGGAAAAGGTAAATCAAAAAAGCGACCAAAG
ATTGTAGAGCTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGACGTGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTTTTTAGAGTCCTCACTGCTAGTTTGTAAAAAAAATTCAACGTCCAAGGAGCC
CTGTTGGAATGGAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGCTGGAAACTTACCTCCCCAAAATGAGTTGCAAGCGTTGCTCACTTCCTTTTCACTTGTTGCAG
TATTGGGAAGAGTCAAAGACTTCTTAGGAGTGATATCAGAAGCTAATAAAAAGTTGCAAGTGGATGCAAAGGACAATGCTGAAAAGTATGATATTGAAGCACTCGATGGC
AATGAGTCAGAAGTCATTGAAATGAACCTGATGTTGGGTATCGCCGATCTTCATACACCTGAAGCTGTGGCTGCTGCTGAATCTGTAATAGTTGGTAACCAGCATGTGAT
TCCATTGACTTGTAGCAGTAGTAGTAGTGAATCTAAGCCTGAAGAGAGTAGTGATGATAGTATTAGCAGTGACAACAATAACGATGACAATGAAAAGAGTGACGATCAGA
ATACCGACAGTGGTAACAGATCGTCAGTTAAACTCAAAAGATCGAAATCTAGAAAAATCAGTCTTAGAAGTAAAAGTAAAGGAAAAGGTAAATCAAAAAAGCGACCAAAG
ATTGTAGAGCTTTCTTGA
Protein sequenceShow/hide protein sequence
MRRASKDLLYLERKDLSSSFLESSLLVCKKNSTSKEPCWNGKPITEPAPKSQAGNLPPQNELQALLTSFSLVAVLGRVKDFLGVISEANKKLQVDAKDNAEKYDIEALDG
NESEVIEMNLMLGIADLHTPEAVAAAESVIVGNQHVIPLTCSSSSSESKPEESSDDSISSDNNNDDNEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
IVELS