CuGenDBv2

Gene ID	Spg020248
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pentatricopeptide repeat-containing protein At1g80550, mitochondrial
Genome location	scaffold1:27762785..27763318
RNA-Seq Expression	Spg020248
Synteny	Spg020248
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575615.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

4.7e-22

71.76

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG--------SNISG-----TGYYDARKNF
        MEELGCSP ESAYN+LIDALVEKGMIDMARKYDE+MVAKGLSPKLREELGTKM+NGG         N+SG      GY+D R +F
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG--------SNISG-----TGYYDARKNF

KAG7014158.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-20

92.98

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYN+LIDALVEKGMIDMARKYDE+MVAKGLSPKLREELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

XP_022148858.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia]

8.9e-21

94.74

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLREELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

XP_023522861.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucurbita pepo subsp. pepo]

7.6e-20

91.23

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYN+LIDALVEKGMIDMARKYDE+MV KGLSPKLREELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

XP_038896131.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Benincasa hispida]

8.9e-21

94.74

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLREELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBR1 Uncharacterized protein

1.1e-19

91.23

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP E AYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLR ELGT+MMNGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

A0A1S3CFA1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

1.1e-19

91.23

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP E AYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLR ELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

A0A5A7UVK9 Pentatricopeptide repeat-containing protein

1.1e-19

91.23

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP E AYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLR ELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

A0A6J1D599 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

4.3e-21

94.74

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYNALIDALVEKGMIDMARKYDE+MVAKGLSPKLREELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

A0A6J1GNU3 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

6.3e-20

91.23

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG
        MEELGCSP ESAYN+LIDALVEKGMIDMARKYDE+MVAKGLSPKLR ELGTKM+NGG
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGG

SwissProt top hits

e value

%identity

Alignment

Q8LDU5 Pentatricopeptide repeat-containing protein At4g01400, mitochondrial

4.6e-04

48.72

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Query:  GCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSP
        GCSP   +Y  LI  L ++GM D  +KY E+M++KG SP
Subjt:  GCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSP

Q9M8M3 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial

8.7e-11

54.55

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMN
        M+E G +P  +AYNA+IDAL++KGM+DMAR+Y+E+M+ +GLSP+ R EL  K ++
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMN

Arabidopsis top hits

e value

%identity

Alignment

AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein

6.2e-12

54.55

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Query:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMN
        M+E G +P  +AYNA+IDAL++KGM+DMAR+Y+E+M+ +GLSP+ R EL  K ++
Subjt:  MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMN

AT4G01400.3 FUNCTIONS IN: molecular_function unknown

3.3e-05

48.72

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Query:  GCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSP
        GCSP   +Y  LI  L ++GM D  +KY E+M++KG SP
Subjt:  GCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSP

Sequences

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CDS sequence

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ATGGAGGAACTTGGGTGTAGTCCAATGGAGTCTGCTTACAATGCTTTAATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTACGATGAAAAAATGGT
AGCGAAGGGTCTTTCGCCTAAGCTAAGAGAGGAATTGGGGACAAAGATGATGAATGGTGGCTCCAATATATCAGGGACAGGCTATTATGATGCTCGGAAGAATTTCCAGT
TCTTGAGATTTCATGAAGCATTCTGCAGATGA

mRNA sequence

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Protein sequence

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MEELGCSPMESAYNALIDALVEKGMIDMARKYDEKMVAKGLSPKLREELGTKMMNGGSNISGTGYYDARKNFQFLRFHEAFCR

Spg020248 (gene) of Sponge gourd (cylindrica) v1 genome