CuGenDBv2

Gene ID	Spg020267
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
Genome location	scaffold1:25865233..25872794
RNA-Seq Expression	Spg020267
Synteny	Spg020267
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0006325 - chromatin organization (biological process) GO:0016573 - histone acetylation (biological process) GO:0000123 - histone acetyltransferase complex (cellular component) GO:0005681 - spliceosomal complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003724 - RNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576064.1 Chromatin modification-related protein MEAF6, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

XP_004148974.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Cucumis sativus]

2.3e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMECDLGDKVGYAIRFEDVTGP+TIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

XP_022143541.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Momordica charantia]

2.3e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMECDLGDKVGYAIRFEDVTGP+TIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

XP_022953559.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Cucurbita moschata]

2.3e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

XP_022991560.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X2 [Cucurbita maxima]

2.3e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5G4 Uncharacterized protein

1.1e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMECDLGDKVGYAIRFEDVTGP+TIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

A0A6J1CQK3 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

1.1e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMECDLGDKVGYAIRFEDVTGP+TIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

A0A6J1GNB0 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

1.1e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

A0A6J1JTA4 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X2

1.1e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

A0A6J1JV66 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1

1.1e-09

94.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEMEC+LGDKVGYAIRFEDVTGPTTIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

SwissProt top hits

e value

%identity

Alignment

F4K2E9 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

2.8e-10

83.33

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEME +LGDK+GYAIRFEDVTGP T+IK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

O42945 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43

8.4e-07

63.89

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RV++EM+ DLG++VGY IRFED +GP T++K
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

Q38953 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5

9.9e-08

72.22

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RV+EE  C LG++VGYAIRFED TGP T+IK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

Q54F05 ATP-dependent RNA helicase dhx8

8.4e-07

69.44

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSV++RV+EE  C LG +VGYAIRFED T P TIIK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

Q9P774 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16

2.9e-07

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEM   LG  VGY+IRFEDVTGP T+IK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

Arabidopsis top hits

e value

%identity

Alignment

AT2G35340.1 helicase domain-containing protein

4.7e-05

61.11

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA RV++EM   LG +VGY+IRFED T   TI+K
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

AT2G47250.1 RNA helicase family protein

5.6e-06

55.56

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSV+RRV++EM+  +G++VGY+IRFED T   T++K
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

AT3G26560.1 ATP-dependent RNA helicase, putative

7.1e-09

72.22

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RV+EE  C LG++VGYAIRFED TGP T+IK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

AT3G62310.1 RNA helicase family protein

6.6e-07

58.33

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSV+RRV+EEM+  +G++VGY+IRFED + P T++K
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

AT5G13010.1 RNA helicase family protein

2.0e-11

83.33

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Query:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK
        MSVA+RVSEEME +LGDK+GYAIRFEDVTGP T+IK
Subjt:  MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIK

Sequences

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CDS sequence

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ATGAGTGTAGCAAGAAGAGTTAGCGAAGAGATGGAGTGTGATTTGGGTGATAAAGTAGGTTATGCCATTCGATTCGAGGACGTAACTGGACCAACAACTATTATTAAGGT
TGTAGAAGCTGAAAAGAAGCCTGGCGCATGGAAGCTTGATGTTGTAGAAGCTTGGCGCATGGGAAGCTTGATTCTGGTTGCATTACGAATAACTCAATCGCATAGGATAT
TGGTTGTCTTAGGAATAATTCAACCACTTGATTTAAGGAAAGACACTTTTACTACCCACTCCTTCCCTGTTGATCTGACCCTCGAATACTCCAGGCAAAATCATGATCAA
GCATTGACTATGAGGCTTGAGCTAAAAAGGCAAAGAGCACAACGTCGAGATGCATTGCTGAATGCTGTACCAAAGGTCCAACAGCGTTGTGACGCTATAGCCAACGTCTT
GAAAGCCAGAAACGTGTGCAAGGCAGCGTAG

mRNA sequence

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Protein sequence

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MSVARRVSEEMECDLGDKVGYAIRFEDVTGPTTIIKVVEAEKKPGAWKLDVVEAWRMGSLILVALRITQSHRILVVLGIIQPLDLRKDTFTTHSFPVDLTLEYSRQNHDQ
ALTMRLELKRQRAQRRDALLNAVPKVQQRCDAIANVLKARNVCKAA

Spg020267 (gene) of Sponge gourd (cylindrica) v1 genome