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Spg020287 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020287
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold1:28881537..28891096
RNA-Seq ExpressionSpg020287
SyntenySpg020287
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1352Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH
        +QLK+I +WPKEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC  LL+ +
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.7e-1354.17Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL
        +QLK+IA WPKEKRATE + R +++  L ++PEL++R R KL+ ILF +++A E F SIP   KLEYC  LL
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.0e-1355.56Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL
        EQLK+IA+WPKEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC  LL
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL

XP_038880512.1 ER membrane protein complex subunit 6 [Benincasa hispida]1.4e-1346Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKHSLPTTPRPMTKQDNATPTRKLDQEA
        +QLK IAEWPKEKRATE +   K+V+ L ++PEL NRKRV+L+ I+F +++ T+SF SIP  LKL+YC  LL ++    T   +    ++T + K   +A
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKHSLPTTPRPMTKQDNATPTRKLDQEA

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]1.4e-1353.33Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH
        +QLKSIAEW K++ ATE + R K+V  L ++P+L+ ++++K M+I+F N+  TESF SIPA +KLEYCE LL  H
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.5e-1355.56Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL
        EQLK+IA+WPKEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC  LL
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL

A0A5A7SQU2 Putative nuclease HARBI13.3e-1354.17Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL
        +QLK+IA WPKEKRATE + R +++  L ++PEL++R R KL+ ILF +++A E F SIP   KLEYC  LL
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL

A0A5A7U0H7 Retrotransposon protein1.5e-1355.56Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL
        EQLK+IA+WPKEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC  LL
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLL

A0A5A7V8C5 Putative nuclease HARBI19.5e-1352Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH
        +QLK+IA WPKEKRATE +   ++V  L ++PEL+++ R KLM ILF +++  E F SIP  LKLEYC  LL  +
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH

A0A5D3BZU3 Retrotransposon protein6.6e-1452Show/hide
Query:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH
        +QLK+I +WPKEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A E F SIP  LKLEYC  LL+ +
Subjt:  EQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGTATACAGAACAACTAAAGTCCATTGCAGAGTGGCCGAAAGAAAAACGTGCCACAGAGGCCGACTTCCGAGATAAAATTGTAACCCACTTGATGGAGGTACC
CGAACTGGAGAACCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTCCTCTGAAGTTGGAGTATTGTG
AATACCTTTTGGACAAACACAGTTTACCCACCACTCCTCGACCAATGACTAAGCAGGACAACGCAACACCAACACGAAAGCTTGATCAGGAAGCGGACCCCAGAGCAGAG
CGAGTCGAAGGGATTGAGCCGAGTTCCTTCCGCCTCCGTTCGATCCCTACTGTCCCGGTCTTGCAGGTCACGTCTTCCCCGTCTTCAACAAATTCACTGCTAGTGTCACG
TGAAGGTCAGATCTGGGATTGTTCCGCCGGCACTTCACTCACGGTAGCAGCAGCAATAGTCTTTTCCCCGTTTCTTTCACGCGACAGCAGCAGTACATGGTTGCATCAGT
GCTTGCGGTTAGCTTCAGATCTACTTGTTCGCAGTGCTTGTCGATTCGTGGGTAGTTCGATTGTGTTCGCGGATCTCGTCGGGACGAAGGGGGCTCGTCGGAAATTTGAA
ACCTCCAAATCTGAATTGGGGAAGTTCGTCGGATGTCGTGGGTTTCGTCACGCAGGTTCAGATCAGTCACAGAGCGATACTTCTCCCAATGCAAACAATTTCATAGACAT
AGGCATGGTTTTGCCAATGCAAATGGCTTGCATCGGAAAAAATAGCTATGCTGACGAAATTGCTTGTGTCGGGAGTTCAACAAGTGAAATATGCATTTTCTCTTTTCTTG
ACGCATTTGATGTCTATCTCAATGCAAAGGTTGCGTTGGAAGAAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGTATACAGAACAACTAAAGTCCATTGCAGAGTGGCCGAAAGAAAAACGTGCCACAGAGGCCGACTTCCGAGATAAAATTGTAACCCACTTGATGGAGGTACC
CGAACTGGAGAACCGAAAAAGGGTGAAGCTGATGGATATCCTTTTCAATAACATGAAAGCGACAGAGAGCTTCTTCTCCATTCCGGCTCCTCTGAAGTTGGAGTATTGTG
AATACCTTTTGGACAAACACAGTTTACCCACCACTCCTCGACCAATGACTAAGCAGGACAACGCAACACCAACACGAAAGCTTGATCAGGAAGCGGACCCCAGAGCAGAG
CGAGTCGAAGGGATTGAGCCGAGTTCCTTCCGCCTCCGTTCGATCCCTACTGTCCCGGTCTTGCAGGTCACGTCTTCCCCGTCTTCAACAAATTCACTGCTAGTGTCACG
TGAAGGTCAGATCTGGGATTGTTCCGCCGGCACTTCACTCACGGTAGCAGCAGCAATAGTCTTTTCCCCGTTTCTTTCACGCGACAGCAGCAGTACATGGTTGCATCAGT
GCTTGCGGTTAGCTTCAGATCTACTTGTTCGCAGTGCTTGTCGATTCGTGGGTAGTTCGATTGTGTTCGCGGATCTCGTCGGGACGAAGGGGGCTCGTCGGAAATTTGAA
ACCTCCAAATCTGAATTGGGGAAGTTCGTCGGATGTCGTGGGTTTCGTCACGCAGGTTCAGATCAGTCACAGAGCGATACTTCTCCCAATGCAAACAATTTCATAGACAT
AGGCATGGTTTTGCCAATGCAAATGGCTTGCATCGGAAAAAATAGCTATGCTGACGAAATTGCTTGTGTCGGGAGTTCAACAAGTGAAATATGCATTTTCTCTTTTCTTG
ACGCATTTGATGTCTATCTCAATGCAAAGGTTGCGTTGGAAGAAGTTTAA
Protein sequenceShow/hide protein sequence
MASYTEQLKSIAEWPKEKRATEADFRDKIVTHLMEVPELENRKRVKLMDILFNNMKATESFFSIPAPLKLEYCEYLLDKHSLPTTPRPMTKQDNATPTRKLDQEADPRAE
RVEGIEPSSFRLRSIPTVPVLQVTSSPSSTNSLLVSREGQIWDCSAGTSLTVAAAIVFSPFLSRDSSSTWLHQCLRLASDLLVRSACRFVGSSIVFADLVGTKGARRKFE
TSKSELGKFVGCRGFRHAGSDQSQSDTSPNANNFIDIGMVLPMQMACIGKNSYADEIACVGSSTSEICIFSFLDAFDVYLNAKVALEEV