CuGenDBv2

Gene ID	Spg020303
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribosome production factor 1-like
Genome location	scaffold1:27805938..27810341
RNA-Seq Expression	Spg020303
Synteny	Spg020303
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process) GO:0000470 - maturation of LSU-rRNA (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008443155.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo]

4.3e-107

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Query:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH
        K+++ +  + R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPAFISELLSVIPNAH
Subjt:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH

Query:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------
        YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG            
Subjt:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------

Query:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
                             RYIFESK NKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_022155906.1 ribosome production factor 1-like [Momordica charantia]

8.1e-106

71.62

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Query:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP
        ++ K+++ +  + R   E++    G E   R   R     R  +E     D  +LFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+FISELLSVIP
Subjt:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------
        NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG         
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------

Query:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
                                RYIF+SK NKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
Subjt:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR

Query:  FFL
        FFL
Subjt:  FFL

XP_022156150.1 ribosome production factor 1-like [Momordica charantia]

8.1e-106

71.62

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Query:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP
        ++ K+++ +  + R   E++    G E   R   R     R  +E     D  +LFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+FISELLSVIP
Subjt:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------
        NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG         
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------

Query:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
                                RYIF+SK NKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
Subjt:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR

Query:  FFL
        FFL
Subjt:  FFL

XP_031737500.1 ribosome production factor 1 [Cucumis sativus]

1.4e-105

71.67

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Query:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH
        K+++ +  + R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKR+ LPK+LITTCRFNSTIGPAFISELLSVIPNAH
Subjt:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH

Query:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------
        YYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVG            
Subjt:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------

Query:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
                             RYIFESK NKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

XP_038906205.1 ribosome production factor 1 [Benincasa hispida]

3.3e-107

72.55

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Query:  IEDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLS
        +++++   KR R+K  R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKRE LPKVLITTCRFNSTIGP FISELLS
Subjt:  IEDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLS

Query:  VIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------
        VIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLR+G      
Subjt:  VIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------

Query:  ---------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS
                                   RYIFESK NKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS
Subjt:  ---------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS

Query:  RRRFFL
        RRRFFL
Subjt:  RRRFFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LH42 Brix domain-containing protein

6.7e-106

71.67

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Query:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH
        K+++ +  + R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKR+ LPK+LITTCRFNSTIGPAFISELLSVIPNAH
Subjt:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH

Query:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------
        YYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRK+IKNHGNPT H+PELVLTNFTTRLGLRVG            
Subjt:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------

Query:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
                             RYIFESK NKKEADSK KSK TKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A1S3B854 ribosome production factor 1 isoform X1

2.1e-107

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Query:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH
        K+++ +  + R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPAFISELLSVIPNAH
Subjt:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH

Query:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------
        YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG            
Subjt:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------

Query:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
                             RYIFESK NKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A5A7UHC7 Ribosome production factor 1 isoform X1

2.1e-107

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Query:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH
        K+++ +  + R   E++    G E   R+  R     R  +E     D  +LFAGNDADEFSSIIKR+ LPKVLITTCRFNSTIGPAFISELLSVIPNAH
Subjt:  KVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNAH

Query:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------
        YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPT H+PELVLTNFTTRLGLRVG            
Subjt:  YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG------------

Query:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
                             RYIFESK NKKEADSK KSKDTKGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Subjt:  ---------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

A0A6J1DPH5 ribosome production factor 1-like

3.9e-106

71.62

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Query:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP
        ++ K+++ +  + R   E++    G E   R   R     R  +E     D  +LFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+FISELLSVIP
Subjt:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------
        NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG         
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------

Query:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
                                RYIF+SK NKKEADSKS SKD KGEKV +QKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
Subjt:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR

Query:  FFL
        FFL
Subjt:  FFL

A0A6J1DT48 ribosome production factor 1-like

3.9e-106

71.62

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Query:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP
        ++ K+++ +  + R   E++    G E   R   R     R  +E     D  +LFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+FISELLSVIP
Subjt:  EELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSER-----RRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------
        NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG         
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVG---------

Query:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
                                RYIF+SK NKKEADSKS SKD KGEKV QQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR
Subjt:  ------------------------RYIFESKVNKKEADSKSKSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRR

Query:  FFL
        FFL
Subjt:  FFL

SwissProt top hits

e value

%identity

Alignment

Q5R631 Ribosome production factor 1

1.8e-39

40.07

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Query:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA
        + ++ K K +  K+++ +RE        +   +  + +R ++E     +  ++      DEF+S   ++  PK+LITT             +L +VIPN+
Subjt:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA

Query:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--
        H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NFTTRLG  +GR +F S    
Subjt:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--

Query:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL
        N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHKP EMDTSRR+F L
Subjt:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL

Q6IQU6 Ribosome production factor 1

1.2e-38

39.01

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Query:  LKVK-RSRSKQMRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSL-------QLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVI
        LK+K   R K+M  K+++K      + +    E  +  E +R +D         ++      DEFS+   R   PKVLITT          F  +L +VI
Subjt:  LKVK-RSRSKQMRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSL-------QLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVI

Query:  PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGR-----Y
        P+A+ Y R    LKK+I    ++ FT LMV++  R+  +G+++  LP+GPTAHFK+S+V LRK++K  G NPT H PE++L NFTTRLG  +GR     +
Subjt:  PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGR-----Y

Query:  IFESKVNKKEADSKSKSKD----TKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK-PEMDTSRRRFFL
          + +   ++  +    +D         + + +    +QE GPRFT+KL SLQ GTFDSK GEYEWVHK  EMD+SRR+F L
Subjt:  IFESKVNKKEADSKSKSKD----TKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK-PEMDTSRRRFFL

Q7TND5 Ribosome production factor 1

2.3e-39

40.07

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Query:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA
        + ++ K K +  K+++ +RE        +   +  + +R ++E     +  ++      DEF+S   R+  PK+LITT             +L +VIP++
Subjt:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA

Query:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--
        H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NFTTRLG  +GR +F S    
Subjt:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--

Query:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL
        N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHKP EMDTSRR+F L
Subjt:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL

Q8AVP1 Ribosome production factor 1

2.3e-39

39.16

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Query:  LKVKRSRSKQ---MRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSLQLFAGND-------ADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLS
        +K+K+ + K+   +R KR+++    G +   +   +    E +R +D   +   ++        DEF+    ++  PK+LITT          F  +L S
Subjt:  LKVKRSRSKQ---MRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSLQLFAGND-------ADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLS

Query:  VIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGR----
        +IPN+  Y R    LKKII    ++D+T L+V++  R+  +GL++  LP+GPTAHFKISNV LRK++K  G  PT H+PE++L NFTTRLG  +GR    
Subjt:  VIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGR----

Query:  -YIFESKVNKKEADSKSKSKDTKGEKV------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK-PEMDTSRRRFFL
         Y  +     ++  +    +D    +       S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHK  EMDTSRR+F L
Subjt:  -YIFESKVNKKEADSKSKSKDTKGEKV------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHK-PEMDTSRRRFFL

Q9H9Y2 Ribosome production factor 1

1.8e-39

40.07

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Query:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA
        + ++ K K +  K+++ +RE        +   +  + +R ++E     +  ++      DEF+S   ++  PK+LITT             +L +VIPN+
Subjt:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRR-WEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIPNA

Query:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--
        H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP GPTAHFK+S+V LRK+IK  G +PT H PE++L NFTTRLG  +GR +F S    
Subjt:  HYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHG-NPTSHEPELVLTNFTTRLGLRVGRYIFESKV--

Query:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL
        N +    +  +   + + +          S++KV   +QE GPRFT+KL SLQ GTFDSK GEYEWVHKP EMDTSRR+F L
Subjt:  NKKEADSKSKSKDTKGEKV----------SQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKP-EMDTSRRRFFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

1.2e-27

34.27

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Query:  RGIEDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP
        + +E +E KV     +Q R  RE    G     + R  E +  +E +    +  +   +  DE+++    EA PK+L+TT R  S     F  EL  V P
Subjt:  RGIEDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSVIP

Query:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDI---KNHGNPTSHEPELVLTNFTTRLGLRVG---RYI
        N+    RG+  + +IIE A + DFT +++VH  R   DGL+I  LP GPTA+F + NVV R DI   K+ G      P L+  NFTT++G RVG   ++I
Subjt:  NAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDI---KNHGNPTSHEPELVLTNFTTRLGLRVG---RYI

Query:  FES-KVNKKEADSKSKSKD---------TKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
        F + K++ K   + S   D          KGE   +      L+E GPRF ++L  ++ GT +    E EWV +P M+TS++R F+
Subjt:  FES-KVNKKEADSKSKSKD---------TKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

AT4G01560.1 Ribosomal RNA processing Brix domain protein

2.5e-81

55.82

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Query:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRR-----SERRRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSV
        +  E K+++ +  + R   E++    G E  ++         R  +E     D  +LFA  DADEF+ +++RE  PKVL+TTCRFNST GPA ISELLSV
Subjt:  EDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRR-----SERRRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSV

Query:  IPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRY---IF
        IPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP GPTAHFK+SN+VLRKDIKNHGNPTSH+PELVL NFTTRLG RVGR+   +F
Subjt:  IPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRY---IF

Query:  ESKVNKKEADSKS-----------------KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
            N +     +                 ++K++K +K  ++ +  RLQECGPRFT+KL++LQHGTFD+KGGE+EWVHKPEMDTSRRRFFL
Subjt:  ESKVNKKEADSKS-----------------KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

Sequences

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CDS sequence

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ATGAGTGATGATTTCAGTAGGTATTTCAGTAGGGGAAGGGGAATCGAGGATGAAGAGCTTAAGGTCAAGCGGTCGAGAAGCAAGCAAATGAGAAGCAAGAGAGAGGAAAA
ATGGAGCGGCGGTGGTGGAGAGCAGCAGCGGCGCCGGTCGGAGAGGAGGAGGTGGGAAGAAGGAGAGAGAAGTTTTGATTCTCTGCAGCTATTTGCTGGAAATGATGCGG
ATGAATTTAGTTCCATCATAAAGCGTGAAGCTTTGCCAAAAGTTTTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATTTCAGAGTTGCTTTCAGTG
ATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTTCATACGAGTAGGAG
AAAATTGGATGGCCTTCTAATTATTGGCTTACCTGAGGGACCTACGGCCCATTTTAAGATATCAAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCA
GCCATGAGCCAGAGCTTGTATTGACTAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGGTACATTTTTGAAAGCAAGGTAAATAAAAAAGAGGCCGACTCAAAAAGT
AAGTCCAAGGATACCAAGGGTGAGAAAGTTTCTCAGCAGAAAGTAATTGCACGACTTCAGGAATGTGGTCCTCGATTCACAATGAAATTGATCAGTTTGCAGCACGGAAC
TTTCGATTCAAAAGGCGGGGAATATGAGTGGGTTCATAAGCCTGAAATGGATACAAGCCGCAGAAGATTTTTCTTGTGA

mRNA sequence

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Protein sequence

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MSDDFSRYFSRGRGIEDEELKVKRSRSKQMRSKREEKWSGGGGEQQRRRSERRRWEEGERSFDSLQLFAGNDADEFSSIIKREALPKVLITTCRFNSTIGPAFISELLSV
IPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTAHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRYIFESKVNKKEADSKS
KSKDTKGEKVSQQKVIARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

Spg020303 (gene) of Sponge gourd (cylindrica) v1 genome