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Spg020314 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020314
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold1:25749753..25752155
RNA-Seq ExpressionSpg020314
SyntenySpg020314
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH02569.1 ribosomal protein S13A [Prunus dulcis]6.3e-1855.88Show/hide
Query:  EHLQICQEGFDTISNWCY------------------------SSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEA
        EHLQICQEG +T+                               LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+ 
Subjt:  EHLQICQEGFDTISNWCY------------------------SSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEA

Query:  SP
         P
Subjt:  SP

KAE8022421.1 hypothetical protein FH972_008223 [Carpinus fangiana]7.0e-1764.2Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYDWKPIDINDPYVQ--EIG
        LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P      WK ++ N  ++   E+G
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYDWKPIDINDPYVQ--EIG

OIW10648.1 hypothetical protein TanjilG_16020 [Lupinus angustifolius]9.1e-1775Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYD
        LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P  + +D
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYD

ONK55068.1 uncharacterized protein A4U43_UnF7960 [Asparagus officinalis]5.3e-1775.81Show/hide
Query:  CYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        CY  LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYK+ K+  P
Subjt:  CYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

RDX90080.1 40S ribosomal protein S13, partial [Mucuna pruriens]3.1e-1776.19Show/hide
Query:  WCYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        W  ++LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  WCYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

TrEMBL top hitse value%identityAlignment
A0A1R3L637 Uncharacterized protein2.6e-1775.81Show/hide
Query:  CYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        CY  LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYK+ K+  P
Subjt:  CYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

A0A371GHU5 40S ribosomal protein S13 (Fragment)1.5e-1776.19Show/hide
Query:  WCYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        W  ++LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  WCYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

A0A4P1RGW3 Ribosomal_S13_N domain-containing protein4.4e-1775Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYD
        LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P  + +D
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYD

A0A4Y1RE89 Ribosomal protein S13A3.1e-1855.88Show/hide
Query:  EHLQICQEGFDTISNWCY------------------------SSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEA
        EHLQICQEG +T+                               LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+ 
Subjt:  EHLQICQEGFDTISNWCY------------------------SSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEA

Query:  SP
         P
Subjt:  SP

A0A5N6R135 Ribosomal_S13_N domain-containing protein3.4e-1764.2Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYDWKPIDINDPYVQ--EIG
        LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P      WK ++ N  ++   E+G
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASPCLEVYDWKPIDINDPYVQ--EIG

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S136.6e-1879.31Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  SIRKHLER +KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

P59223 40S ribosomal protein S13-11.3e-1879.31Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

P59224 40S ribosomal protein S13-21.3e-1879.31Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

P62302 40S ribosomal protein S135.9e-1981.03Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  SIRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

Q69UI2 40S ribosomal protein S13-13.3e-1775.86Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLY L+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYK+ K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S159.4e-2079.31Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP

AT4G00100.1 ribosomal protein S13A9.4e-2079.31Show/hide
Query:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP
        LAP+I EDLYHL+KK  +IRKHLERN+KDKDSKFRLILVESRI+RLARYYKK K+  P
Subjt:  LAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEASP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTCATTTTAACTGCTAGTCTTTCTAATGGAAGGGAAGTGAATCTTTGTACCATCTATAGAAATTGGTGGCTTTCCTTTGACCATTCAGGTTGTCGAGAACATTT
GCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTTCGCTAGCTCCTAAAATCTTTGAGGATCTTTACCATCTCGTCAAGAAAGTTTTTTCAATCA
GAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCAATCGCCTAGCCCGGTATTACAAAAAGGCAAAAGAAGCT
TCCCCCTGTTTGGAAGTATATGATTGGAAACCAATAGACATTAACGATCCGTATGTGCAAGAGATCGGAAAGTTTGCAGTGACGAAGAGAACACACATCTTATTTGGGGC
TAGATGGACATTCATTGGAGTGGTGAGTGGTGAGGTTGCAGAGGTGAATGAAGGAGAAAAGTACCGGCTTGAGGTAGAGGTGAAAATAGAGATAATATCTAACGATCCTC
CCCCACCAAAATATGAGATAGGTAAGGTTGTTGTGCTGGATCGTAAACCACCACCTGTTGAATCTTGGGAACTCTTAGATTTTAATTTTCCCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTCATTTTAACTGCTAGTCTTTCTAATGGAAGGGAAGTGAATCTTTGTACCATCTATAGAAATTGGTGGCTTTCCTTTGACCATTCAGGTTGTCGAGAACATTT
GCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTTCGCTAGCTCCTAAAATCTTTGAGGATCTTTACCATCTCGTCAAGAAAGTTTTTTCAATCA
GAAAGCATTTGGAGAGAAACAAGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCAATCGCCTAGCCCGGTATTACAAAAAGGCAAAAGAAGCT
TCCCCCTGTTTGGAAGTATATGATTGGAAACCAATAGACATTAACGATCCGTATGTGCAAGAGATCGGAAAGTTTGCAGTGACGAAGAGAACACACATCTTATTTGGGGC
TAGATGGACATTCATTGGAGTGGTGAGTGGTGAGGTTGCAGAGGTGAATGAAGGAGAAAAGTACCGGCTTGAGGTAGAGGTGAAAATAGAGATAATATCTAACGATCCTC
CCCCACCAAAATATGAGATAGGTAAGGTTGTTGTGCTGGATCGTAAACCACCACCTGTTGAATCTTGGGAACTCTTAGATTTTAATTTTCCCAATTAG
Protein sequenceShow/hide protein sequence
MLVILTASLSNGREVNLCTIYRNWWLSFDHSGCREHLQICQEGFDTISNWCYSSLAPKIFEDLYHLVKKVFSIRKHLERNKKDKDSKFRLILVESRINRLARYYKKAKEA
SPCLEVYDWKPIDINDPYVQEIGKFAVTKRTHILFGARWTFIGVVSGEVAEVNEGEKYRLEVEVKIEIISNDPPPPKYEIGKVVVLDRKPPPVESWELLDFNFPN