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Spg020318 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020318
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold1:23418762..23423663
RNA-Seq ExpressionSpg020318
SyntenySpg020318
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025972.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.2e-1033.77Show/hide
Query:  TDIWCSRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGM
        T +  +RS   ++ D+++D   VL++C + +  ME++ +MY +P+ PP   R R + +E  +    DEV+HNVE++ P TQ QN     + ++++PT G+
Subjt:  TDIWCSRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGM

Query:  QYFQTLI-PPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEYEQNHGTTHI
         Y    +   YY++  GPSSS+ + GPS+SY   HR    E  EY  +   T +
Subjt:  QYFQTLI-PPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEYEQNHGTTHI

KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.5e-1231.19Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE
        +IWEPY NV   +  LP +C+N  DIW + S   CF                                            ++ D+++D   VLN+C + +
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE

Query:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY
          ME++ +MY + + PP   R R R +E  +    DEV+HNVE+VPP TQTQ+     + + ++PT G  Y+ + +   YY+AG  PSS + + GPS+ Y
Subjt:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY

Query:  AH
         H
Subjt:  AH

KAA0064245.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]2.6e-1232.8Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIW-------C-----------------------SRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPP
        +IWE Y +V   +  LP +C+N  DIW       C                       SRS   ++ D+++D   VL++C + E  ME++ +MY +P+ P
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIW-------C-----------------------SRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPP

Query:  PSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG---PSSSHEAGPSSSYAH
            R R R +E  +    DEV+HNVE+VPP T+TQ+     + + ++PT G +Y  + +   YY+AG    SS  + GPS+SY H
Subjt:  PSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG---PSSSHEAGPSSSYAH

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]7.0e-1035.5Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRSCFQQICDISEDL-DVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVP
        +IWEPY +V+  L           + W  RS   ++ D+++DL   L++C + E  ME++ +MY +P+ PP   R   R +E  +    D+V+HNVE+VP
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRSCFQQICDISEDL-DVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVP

Query:  PLTQTQNGGTPSTSLVLIPT--PGMQYFQTLIPPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEY
          TQTQ+     + + ++PT   G   F+  I  YY+A  GPSSS+ +  PS+SY   HR    E  EY
Subjt:  PLTQTQNGGTPSTSLVLIPT--PGMQYFQTLIPPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEY

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.5e-1231.19Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE
        +IWEPY NV   +  LP +C+N  DIW + S   CF                                            ++ D+++D   VLN+C + +
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE

Query:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY
          ME++ +MY + + PP   R R R +E  +    DEV+HNVE+VPP TQTQ+     + + ++PT G  Y+ + +   YY+AG  PSS + + GPS+ Y
Subjt:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY

Query:  AH
         H
Subjt:  AH

TrEMBL top hitse value%identityAlignment
A0A5A7SLF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.5e-1033.77Show/hide
Query:  TDIWCSRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGM
        T +  +RS   ++ D+++D   VL++C + +  ME++ +MY +P+ PP   R R + +E  +    DEV+HNVE++ P TQ QN     + ++++PT G+
Subjt:  TDIWCSRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGM

Query:  QYFQTLI-PPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEYEQNHGTTHI
         Y    +   YY++  GPSSS+ + GPS+SY   HR    E  EY  +   T +
Subjt:  QYFQTLI-PPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEYEQNHGTTHI

A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X17.3e-1331.19Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE
        +IWEPY NV   +  LP +C+N  DIW + S   CF                                            ++ D+++D   VLN+C + +
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE

Query:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY
          ME++ +MY + + PP   R R R +E  +    DEV+HNVE+VPP TQTQ+     + + ++PT G  Y+ + +   YY+AG  PSS + + GPS+ Y
Subjt:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY

Query:  AH
         H
Subjt:  AH

A0A5A7VEC1 GATA zinc finger domain-containing protein 10-like isoform X21.3e-1232.8Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIW-------C-----------------------SRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPP
        +IWE Y +V   +  LP +C+N  DIW       C                       SRS   ++ D+++D   VL++C + E  ME++ +MY +P+ P
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIW-------C-----------------------SRSCFQQICDISED-LDVLNLCTSGEASMEQLQHMYRIPMPP

Query:  PSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG---PSSSHEAGPSSSYAH
            R R R +E  +    DEV+HNVE+VPP T+TQ+     + + ++PT G +Y  + +   YY+AG    SS  + GPS+SY H
Subjt:  PSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG---PSSSHEAGPSSSYAH

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X23.4e-1035.5Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRSCFQQICDISEDL-DVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVP
        +IWEPY +V+  L           + W  RS   ++ D+++DL   L++C + E  ME++ +MY +P+ PP   R   R +E  +    D+V+HNVE+VP
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRSCFQQICDISEDL-DVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVP

Query:  PLTQTQNGGTPSTSLVLIPT--PGMQYFQTLIPPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEY
          TQTQ+     + + ++PT   G   F+  I  YY+A  GPSSS+ +  PS+SY   HR    E  EY
Subjt:  PLTQTQNGGTPSTSLVLIPT--PGMQYFQTLIPPYYEA--GPSSSH-EAGPSSSY--AHREQLEEREEY

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X17.3e-1331.19Show/hide
Query:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE
        +IWEPY NV   +  LP +C+N  DIW + S   CF                                            ++ D+++D   VLN+C + +
Subjt:  VIWEPYNNVLPTLPTLPTYCRNDTDIWCSRS---CFQ-------------------------------------------QICDISED-LDVLNLCTSGE

Query:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY
          ME++ +MY + + PP   R R R +E  +    DEV+HNVE+VPP TQTQ+     + + ++PT G  Y+ + +   YY+AG  PSS + + GPS+ Y
Subjt:  ASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQNGGTPSTSLVLIPTPGMQYFQTLI-PPYYEAG--PSSSH-EAGPSSSY

Query:  AH
         H
Subjt:  AH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATCTCGGTGATATGGGAGCCATATAATAATGTTTTGCCTACTTTACCGACTTTACCTACTTATTGTAGGAATGACACTGACATTTGGTGTTCAAGGTCATGTTT
TCAACAAATTTGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGTACTAGTGGTGAGGCCAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGCCACCTC
CCTCGGGTCCTAGGCGTAGACGACGTGCTCAAGAGGAGGGCATTCCAGTTGTGCATGATGAAGTGCACCATAATGTTGAAGATGTACCTCCTCTCACTCAAACACAAAAT
GGTGGTACTCCTTCCACTTCACTTGTTTTGATCCCAACTCCTGGTATGCAGTATTTTCAGACTCTAATTCCACCATACTATGAGGCTGGTCCATCATCATCACATGAGGC
AGGTCCCTCGTCGTCATATGCTCATAGAGAGCAACTAGAAGAACGAGAGGAATATGAGCAAAACCATGGAACCACGCATATCTGGCCGTTATCTTCATCTCGCGTAGGCT
CTTTCTCTCTCTCCCGTGTGTTTCATCTCCGACGAGCTGGGCAACCCACGCACGAAGCAGCAACTACGAAAGCCCATCCTTCTCTGGCTGCCATCCACGCGCACGAGCGG
CGAGACCCACGAGTCTTCTTCCTCCAACTGGTGGTGCTTCTTGTCGTTCAGCCCCCTCTCTGCATTGGCGTGTGTTTCAACTGGCAGACTCGTCGATCGACGGTTGTGAG
CTCCCTCTTTCTCCCTCGTTCTTTCGAACAACAAGAGATCCTCGAGGTTGGTGGGTTTTCAATGGTCGATCTGCGAAGCCAAGCGTATTCACATCATTTAGTTGCCTTTT
CTCTCGGTCCACCGAGTCTCTCGCAGCTTTCGTCCCTCCTACATCGTTGTTCGACGTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATCTCGGTGATATGGGAGCCATATAATAATGTTTTGCCTACTTTACCGACTTTACCTACTTATTGTAGGAATGACACTGACATTTGGTGTTCAAGGTCATGTTT
TCAACAAATTTGTGATATAAGTGAAGATCTAGACGTTCTTAATCTGTGTACTAGTGGTGAGGCCAGTATGGAACAACTTCAGCATATGTACCGCATACCTATGCCACCTC
CCTCGGGTCCTAGGCGTAGACGACGTGCTCAAGAGGAGGGCATTCCAGTTGTGCATGATGAAGTGCACCATAATGTTGAAGATGTACCTCCTCTCACTCAAACACAAAAT
GGTGGTACTCCTTCCACTTCACTTGTTTTGATCCCAACTCCTGGTATGCAGTATTTTCAGACTCTAATTCCACCATACTATGAGGCTGGTCCATCATCATCACATGAGGC
AGGTCCCTCGTCGTCATATGCTCATAGAGAGCAACTAGAAGAACGAGAGGAATATGAGCAAAACCATGGAACCACGCATATCTGGCCGTTATCTTCATCTCGCGTAGGCT
CTTTCTCTCTCTCCCGTGTGTTTCATCTCCGACGAGCTGGGCAACCCACGCACGAAGCAGCAACTACGAAAGCCCATCCTTCTCTGGCTGCCATCCACGCGCACGAGCGG
CGAGACCCACGAGTCTTCTTCCTCCAACTGGTGGTGCTTCTTGTCGTTCAGCCCCCTCTCTGCATTGGCGTGTGTTTCAACTGGCAGACTCGTCGATCGACGGTTGTGAG
CTCCCTCTTTCTCCCTCGTTCTTTCGAACAACAAGAGATCCTCGAGGTTGGTGGGTTTTCAATGGTCGATCTGCGAAGCCAAGCGTATTCACATCATTTAGTTGCCTTTT
CTCTCGGTCCACCGAGTCTCTCGCAGCTTTCGTCCCTCCTACATCGTTGTTCGACGTTCTAG
Protein sequenceShow/hide protein sequence
MWISVIWEPYNNVLPTLPTLPTYCRNDTDIWCSRSCFQQICDISEDLDVLNLCTSGEASMEQLQHMYRIPMPPPSGPRRRRRAQEEGIPVVHDEVHHNVEDVPPLTQTQN
GGTPSTSLVLIPTPGMQYFQTLIPPYYEAGPSSSHEAGPSSSYAHREQLEEREEYEQNHGTTHIWPLSSSRVGSFSLSRVFHLRRAGQPTHEAATTKAHPSLAAIHAHER
RDPRVFFLQLVVLLVVQPPLCIGVCFNWQTRRSTVVSSLFLPRSFEQQEILEVGGFSMVDLRSQAYSHHLVAFSLGPPSLSQLSSLLHRCSTF