CuGenDBv2

Gene ID	Spg020345
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome location	scaffold1:23796216..23805151
RNA-Seq Expression	Spg020345
Synteny	Spg020345
Gene Ontology terms	GO:0009987 - cellular process (biological process) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR006564 - Zinc finger, PMZ-type IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022147768.1 uncharacterized protein LOC111016623 [Momordica charantia]

6.8e-23

52.04

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Query:  SKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGH
        +++A  IL +  E+ARRH +RPI  YEFEV DG    RVNL+++TC+C++F+YY++PCSH IAA   +N++ +TLCS  Y +++LI AYA+PI PLG+
Subjt:  SKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGH

XP_022154803.1 uncharacterized protein LOC111021969 [Momordica charantia]

5.6e-25

51.38

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Query:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI
        SS  +  +++A  IL++V E+AR H +RPI R+EFEV DG    RVN++++TCTC++F YYE+PCSH IA    RNI  HTLCS  Y +D+LI AY +P+
Subjt:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI

Query:  QPLGHVSEW
         PLG   +W
Subjt:  QPLGHVSEW

XP_038890792.1 uncharacterized protein LOC120080248 [Benincasa hispida]

1.6e-27

60.42

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Query:  ILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW
        I+     KA +H +RPI ++EFEV DG LGGRVN+HARTCTCR+F+YYE+ CSH IAAC  RNID  + CS VY +D+++ AYA+PI+PLGH  EW
Subjt:  ILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW

XP_038895917.1 uncharacterized protein LOC120084090 [Benincasa hispida]

1.5e-25

53.21

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Query:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI
        S++ S+ S +A TI     +KA RH +RPI ++EFE+ DG L GR N+H R CTC +F+YYE+PCSHVIAAC  +NID  +LCS VY ++S++ AYA+PI
Subjt:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI

Query:  QPLGHVSEW
        +  GH S W
Subjt:  QPLGHVSEW

XP_038904373.1 uncharacterized protein LOC120090731 [Benincasa hispida]

5.6e-25

56.25

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Query:  ILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW
        I+    +KA R+ +RPI +YEFEV +G L GRVN+H RTCTCR+F+YY++PCSH IAAC  +NID  +LCS VY +D+++ AYA+P++ LGH  EW
Subjt:  ILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D127 uncharacterized protein LOC111016625

3.3e-23

47.71

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Query:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI
        SS  +  +++A  IL+K  E+AR H +RPI R+EF+V DG     VNL+++TCTC++F+Y+E+PCSH IA   +RNI  H+LCS  Y +++LI  YA+P+
Subjt:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI

Query:  QPLGHVSEW
         PLG   +W
Subjt:  QPLGHVSEW

A0A6J1D278 uncharacterized protein LOC111016623

3.3e-23

52.04

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Query:  SKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGH
        +++A  IL +  E+ARRH +RPI  YEFEV DG    RVNL+++TC+C++F+YY++PCSH IAA   +N++ +TLCS  Y +++LI AYA+PI PLG+
Subjt:  SKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGH

A0A6J1DE23 uncharacterized protein LOC111019549

9.6e-23

50.5

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Query:  KFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSE
        ++   IL++V E+AR H +RPI  +EFEV DG    RVN++++T TC++F+YYE+PCSH I     RNI  HTLCS  Y +D+LI AYA+P+ PLG   +
Subjt:  KFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSE

Query:  W
        W
Subjt:  W

A0A6J1DLB0 uncharacterized protein LOC111021969

2.7e-25

51.38

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Query:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI
        SS  +  +++A  IL++V E+AR H +RPI R+EFEV DG    RVN++++TCTC++F YYE+PCSH IA    RNI  HTLCS  Y +D+LI AY +P+
Subjt:  SSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPI

Query:  QPLGHVSEW
         PLG   +W
Subjt:  QPLGHVSEW

A0A6J1E2V3 uncharacterized protein LOC111025530

3.3e-23

41.4

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Query:  RLYRLTSISLEEFDLRVRCQLQLKSRALAFVIRNDEDLNTFLTWKNKHSSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHART
        R   +T+ S E  ++ +R  ++L    +   IR D     F   +   S+  +  S +A   L    EK+RR+ ++P+    F V+DG L G V+L+ART
Subjt:  RLYRLTSISLEEFDLRVRCQLQLKSRALAFVIRNDEDLNTFLTWKNKHSSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHART

Query:  CTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW
        CTC EF+Y  +PCSH IAA  ++NI+ HTL    Y VDSLI AYA+PI P+GH+SEW
Subjt:  CTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

1.5e-04

31.82

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Query:  GRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW
        G V L+  TCTC EF+  + PC H +A C    I+        Y V+     Y+    P+  +S W
Subjt:  GRVNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW

AT1G64260.1 MuDR family transposase

8.1e-06

26.67

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Query:  FATTILEKVEE---KARRHVLRPIARYEFEVDDGHLGGR--VNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLG
        +    ++K+EE    +  +V+  + R  F+V +        V L+  TCTCR+F+ Y+ PC H +A      I+        Y V+     YA    P+ 
Subjt:  FATTILEKVEE---KARRHVLRPIARYEFEVDDGHLGGR--VNLHARTCTCREFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLG

Query:  HVSEW
         V+ W
Subjt:  HVSEW

Sequences

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CDS sequence

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ATGGGTAATCTGAAAGCTTACCGGAAGAGCCCGAACACGCTGGGACGAACCTTAAACCAGCCTAATCACACCCAAAATGCATGGAGAGAGAAGATTCAAACTTCCACCTC
ATGGATTGAGCCTCAAAACTCGCCATTCACACGTGCGAGTGCTCGCCGGAGAGAGGAGACGGCTCTGCAGAGACGATGTCAGCGCGCGAGAGACGAGCTTCACAAACCTC
TAGCTACCGACGGAGAAGACGAATGGAGGAGAGAGAGACAGCCACGGACTGACGGTGTCAGAGAAAGACCGAAGGAAGCGAGAGGAAGATTGGTCTTCACGGGTCACACA
GCCTGCTCGCAATGGAGAGAGACGAAACGGTGGCGAGAGCTTGGTCGGACGGTTCGGGCCATTTTGGACACTGTACAGCACGTATCGGTCATAGTTCAGTTATGTTCGGT
GTGCTTAGAGCTTATTCCGTTATTTTTCCAGCAAGCGTTGATTTGGTTTAGGAGCGCTTGTAAGCTTGGTCGAAAAGGATATTTCCCGGCCGGGAATCATATTGTTTGCA
TCCTGATAATGGCTCGTGTGTGGGTTTGTTATGGTGGTTTGTGGAATGAGAGGGAAAAGGAATATGAGTGTGGAGAGTTGAAGGGTTTCGACATAGACATTGGTATTGCA
TATAGTGACTTCTTAAGTCGATTATATAGATTAACCAGTATAAGTTTAGAGGAATTTGACCTTAGAGTAAGATGTCAACTCCAATTGAAGTCCAGGGCACTCGCGTTTGT
TATTAGGAACGATGAAGACCTTAACACCTTCTTGACATGGAAGAATAAGCACTCTAGTAACCCCAGCCAGTGGTCAAAGTTTGCAACGACCATTTTGGAAAAAGTAGAGG
AGAAGGCAAGGAGGCACGTGCTCAGACCTATTGCTCGATATGAGTTTGAGGTCGACGATGGACATTTGGGTGGACGTGTCAACCTTCACGCTAGAACATGCACCTGTCGT
GAATTTGAATATTACGAACTTCCATGCTCCCATGTGATTGCTGCATGCACTTATCGTAACATTGACTATCATACCCTTTGTTCCAGAGTCTACCATGTGGACTCCTTGAT
AGATGCATATGCACAGCCCATACAACCCCTTGGGCATGTGTCGGAGTGGTAG

mRNA sequence

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Protein sequence

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MGNLKAYRKSPNTLGRTLNQPNHTQNAWREKIQTSTSWIEPQNSPFTRASARRREETALQRRCQRARDELHKPLATDGEDEWRRERQPRTDGVRERPKEARGRLVFTGHT
ACSQWRETKRWRELGRTVRAILDTVQHVSVIVQLCSVCLELIPLFFQQALIWFRSACKLGRKGYFPAGNHIVCILIMARVWVCYGGLWNEREKEYECGELKGFDIDIGIA
YSDFLSRLYRLTSISLEEFDLRVRCQLQLKSRALAFVIRNDEDLNTFLTWKNKHSSNPSQWSKFATTILEKVEEKARRHVLRPIARYEFEVDDGHLGGRVNLHARTCTCR
EFEYYELPCSHVIAACTYRNIDYHTLCSRVYHVDSLIDAYAQPIQPLGHVSEW

Spg020345 (gene) of Sponge gourd (cylindrica) v1 genome