; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020346 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020346
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold1:25187079..25191969
RNA-Seq ExpressionSpg020346
SyntenySpg020346
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-3451.58Show/hide
Query:  ENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMST
        +++H ++  ++  +TL EF  ++F   H +E       +  ++          EEVDNS + +QRTSVFDRIKP TTRS VFQR+SMA  EEENQC MST
Subjt:  ENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMST

Query:  STRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
          R  AF+RL++STSKK R ST  FDRLK+T+DQ QR+  +F+ K F E N D K HS +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  STRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-3555.31Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        Q +TL EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EEENQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K HS +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3348.79Show/hide
Query:  KAIEEKDSQIAQLKSQIENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQ
        K I+EKD +  Q +              + +TL EFF ++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQ
Subjt:  KAIEEKDSQIAQLKSQIENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQ

Query:  RMSMAATEEENQCSMSTSTRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQ
        R+SMA  EEENQC MST TR  AF+RL++S SKK R ST  FDRLK+T+DQ QR+  + + K F E N D K +S +PSR+KRK S+ INTEGSLT  P+
Subjt:  RMSMAATEEENQCSMSTSTRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQ

Query:  VRCFTHP
           FT+P
Subjt:  VRCFTHP

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3353.07Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        + +TL EF S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EE+NQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K H+ +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3353.07Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        + +TL EF S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EE+NQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K H+ +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.4e-3451.58Show/hide
Query:  ENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMST
        +++H ++  ++  +TL EF  ++F   H +E       +  ++          EEVDNS + +QRTSVFDRIKP TTRS VFQR+SMA  EEENQC MST
Subjt:  ENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMST

Query:  STRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
          R  AF+RL++STSKK R ST  FDRLK+T+DQ QR+  +F+ K F E N D K HS +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  STRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

A0A5A7TQ06 Retrotransposon gag protein1.3e-3555.31Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        Q +TL EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EEENQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K HS +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

A0A5A7U974 Retrotransposon gag protein7.0e-3448.79Show/hide
Query:  KAIEEKDSQIAQLKSQIENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQ
        K I+EKD +  Q +              + +TL EFF ++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQ
Subjt:  KAIEEKDSQIAQLKSQIENQHIVESSQTQQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQ

Query:  RMSMAATEEENQCSMSTSTRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQ
        R+SMA  EEENQC MST TR  AF+RL++S SKK R ST  FDRLK+T+DQ QR+  + + K F E N D K +S +PSR+KRK S+ INTEGSLT  P+
Subjt:  RMSMAATEEENQCSMSTSTRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQ

Query:  VRCFTHP
           FT+P
Subjt:  VRCFTHP

A0A5A7UI09 Retrotransposon gag protein7.0e-3453.07Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        + +TL EF S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EE+NQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K H+ +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

A0A5D3CCI8 Retrotransposon gag protein7.0e-3453.07Show/hide
Query:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT
        + +TL EF S++F   H +E       +   +          EEVDNS + +QRTSVFDRIKP TTRSSVFQR+SMA  EE+NQC  ST  R  AF+RL+
Subjt:  QQVTLNEFFSKTF---HKKEKGNFATSYCIDV----------EEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLT

Query:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP
        +STSKK R ST  FDRLK+T+DQ QR+  + + K F E N D K H+ +PSRMKRK SV INTEGSLT  P+   FT+P
Subjt:  VSTSKKIRSSTFVFDRLKVTDDQPQRKTDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLT--PQVRCFTHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTACTACTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTTTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAATCAACATATCGTCGAATCAAGTCAAACCCAACAGGTGACT
TTAAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGGAAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGGGAACAAAG
GACCTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTTCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCA
CTCGACCTTTAGCTTTTCAAAGGCTAACTGTCTCCACATCGAAGAAAATTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAG
ACAGACAACTTCGAGGTGAAACATTTCGATGAAGTAAACAGCGACAAGAAGTTTCATAGTAGCATCCCATCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGA
AGGTTCCTTGACGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTCGCTCCTGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAG
TTCGAAGGTTCTCAAGCGCTTCGTTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCCCTTC
GTTCCAGTTCCTTCTCTCCAATTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTATTCGTTGTACGTTGCT
GCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCTTCCAAGTGCGAAGGATTTTATGTTGTACGCTACTGCGTTGTTCCCTCTTC
TCTCAAGTTTGAAGGTTCGCATGGCGTTGCTTCGCTGGTCATTCTTCAAGTTCAAAGGTTCTGACGCTGCACAGCTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGC
TGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTC
TCCAAGTTCGAAGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTTCAAGTTCGAAGGTTCTCACACGTTCCGTGCAGTTCCTTC
TCTCCAAGTTCGAAGGTTCTCACGCTGCGCTATTGCGCTGCTTCATTCTCCAAGTTGAAAGTTCGCACGGTGTGCTGCTGCGCGCTGCTCCCTTCTCTCACCAAAGTTCG
AGGGTTTTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGT
TGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAGTTCGAAAGTTCACCCGCTGTTCTCATGATACGCTGCTTTGTTGTTCCT
TCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGGCCAAGTGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTACTACTCATTGTTGCTTCAATGAACTGACATTGCAAGAAGATAAAACTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTTTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAATCAACATATCGTCGAATCAAGTCAAACCCAACAGGTGACT
TTAAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGGAAACTTTGCGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGGGAACAAAG
GACCTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTTCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCA
CTCGACCTTTAGCTTTTCAAAGGCTAACTGTCTCCACATCGAAGAAAATTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAG
ACAGACAACTTCGAGGTGAAACATTTCGATGAAGTAAACAGCGACAAGAAGTTTCATAGTAGCATCCCATCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGA
AGGTTCCTTGACGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTCGCTCCTGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAG
TTCGAAGGTTCTCAAGCGCTTCGTTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCCCTTC
GTTCCAGTTCCTTCTCTCCAATTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTATTCGTTGTACGTTGCT
GCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCTTCCAAGTGCGAAGGATTTTATGTTGTACGCTACTGCGTTGTTCCCTCTTC
TCTCAAGTTTGAAGGTTCGCATGGCGTTGCTTCGCTGGTCATTCTTCAAGTTCAAAGGTTCTGACGCTGCACAGCTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGC
TGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTC
TCCAAGTTCGAAGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTTCAAGTTCGAAGGTTCTCACACGTTCCGTGCAGTTCCTTC
TCTCCAAGTTCGAAGGTTCTCACGCTGCGCTATTGCGCTGCTTCATTCTCCAAGTTGAAAGTTCGCACGGTGTGCTGCTGCGCGCTGCTCCCTTCTCTCACCAAAGTTCG
AGGGTTTTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGT
TGCTTCCTTCTCCAAATTCGAAGGTTCTCATACTGCGCTGCTACGTTGCTTCCTTCTCCAAGTTCGAAAGTTCACCCGCTGTTCTCATGATACGCTGCTTTGTTGTTCCT
TCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGGCCAAGTGGGAATGA
Protein sequenceShow/hide protein sequence
MSSTTHCCFNELTLQEDKTSIVAGQETTLQGAYTNDKFLVKYNPFFEPDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIVESSQTQQVT
LNEFFSKTFHKKEKGNFATSYCIDVEEVDNSEKGEQRTSVFDRIKPSTTRSSVFQRMSMAATEEENQCSMSTSTRPLAFQRLTVSTSKKIRSSTFVFDRLKVTDDQPQRK
TDNFEVKHFDEVNSDKKFHSSIPSRMKRKFSVLINTEGSLTPQVRCFTHPKFVAPASSSSKVLTRFVGVPSLQVRRFSSASLEFLLPKFEGSHAFRCSSFSPSSKVLTPF
VPVPSLQFLLSKFEGPYTVRYCVVPSPSSKVIRCTLLLCSFSKFEGSQLYDCYVVPLPSAKDFMLYATALFPLLSSLKVRMALLRWSFFKFKGSDAAQLPSPSLKVLTLR
CFAPVPSLQVRRFSRVSLQFLLPKFEGSHAFRCSSFSPSSKQFLLPKFEGSHALRSSSFSSSSKVLTRSVQFLLSKFEGSHAALLRCFILQVESSHGVLLRAAPFSHQSS
RVLTLRCFLHQVRRFSYCAATLLPSPNSKVLILRCYVASFSKFEGSHTALLRCFLLQVRKFTRCSHDTLLCCSFSKFEGSALLKDVAAVMEAKWE