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Spg020356 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020356
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionArabinogalactan peptide 23-like
Genome locationscaffold1:28163528..28165318
RNA-Seq ExpressionSpg020356
SyntenySpg020356
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]2.1e-1688.71Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMKNFACAAF+AV ASLSMVLA D AA+PAPGPSSG SATLPV+GTLLGASAASLIAYCLQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]5.8e-1487.93Show/hide
Query:  NFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        NFACAAF+ VAASLSMVLA D AA+PAPGPSS ASATLPV+GTLLGASAASLIAYCLQ
Subjt:  NFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

RQO85418.1 hypothetical protein POPTR_001G268801 [Populus trichocarpa]1.2e-0663.93Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMK  ACA   A AAS+S V+A++ AAPAP P+SGAS +LPV+G+L+GAS ASLIA  LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

XP_024438614.1 arabinogalactan peptide 23-like [Populus trichocarpa]1.2e-0663.93Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMK  ACA   A AAS+S V+A++ AAPAP P+SGAS +LPV+G+L+GAS ASLIA  LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

XP_042956774.1 arabinogalactan protein 23-like [Carya illinoinensis]1.2e-0664.62Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLA----EDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMK  ACA  VA AAS+S VLA    E + APAPGPSSGASA LPV+G+++GAS  SL+AY LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLA----EDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)1.6e-0655.74Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        M+MK  +CA  VA A+  +++ ++D+ APAPGPSSGASA LPV G+L+GAS  S  AY LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

A0A2P5CAP7 Uncharacterized protein2.1e-0657.14Show/hide
Query:  SFIMEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL
        +FIME+K  + A  VA A+  S++ A +  APAPGPSSGASATLPV+G+L+GAS  S  AY L
Subjt:  SFIMEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL

A0A3N7FUN0 Uncharacterized protein5.6e-0763.93Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMK  ACA   A AAS+S V+A++ AAPAP P+SGAS +LPV+G+L+GAS ASLIA  LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

A0A5D3E271 Arabinogalactan peptide 23-like1.0e-1688.71Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMKNFACAAF+AV ASLSMVLA D AA+PAPGPSSG SATLPV+GTLLGASAASLIAYCLQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAED-AAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

B9HNM7 Uncharacterized protein7.4e-0762.3Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ
        MEMK  ACA   A AAS+S V+A++ AAPAP P+SGASA+LP++G+L+GAS AS IA  LQ
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 234.2e-0751.67Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL
        MEMK  AC    A A+  +++ AE+  APAPGP+S ASA LP +G+L+GAS  SL +Y L
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)1.2e-0654.1Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGP-SSGASATLPVIGTLLGASAASLIAYCL
        MEMK  AC   V  AAS++ V+A +  APAPGP +SGAS  +P +G+L+GAS  SL AY L
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGP-SSGASATLPVIGTLLGASAASLIAYCL

AT3G57690.1 arabinogalactan protein 232.9e-0851.67Show/hide
Query:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL
        MEMK  AC    A A+  +++ AE+  APAPGP+S ASA LP +G+L+GAS  SL +Y L
Subjt:  MEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTGGTCTTTCTCTAAAATCTCTTTTAGCCCCATCTTTCATCATGGAAATGAAGAATTTTGCCTGCGCCGCCTTCGTCGCTGTTGCCGCCTCCCTGAGCATGGT
TTTGGCTGAGGACGCAGCAGCCCCGGCACCCGGCCCATCCAGCGGCGCTTCCGCTACCTTGCCCGTCATCGGGACGCTGCTAGGTGCATCTGCTGCCTCTCTTATTGCTT
ACTGCCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTTGGTCTTTCTCTAAAATCTCTTTTAGCCCCATCTTTCATCATGGAAATGAAGAATTTTGCCTGCGCCGCCTTCGTCGCTGTTGCCGCCTCCCTGAGCATGGT
TTTGGCTGAGGACGCAGCAGCCCCGGCACCCGGCCCATCCAGCGGCGCTTCCGCTACCTTGCCCGTCATCGGGACGCTGCTAGGTGCATCTGCTGCCTCTCTTATTGCTT
ACTGCCTTCAGTAA
Protein sequenceShow/hide protein sequence
MEVGLSLKSLLAPSFIMEMKNFACAAFVAVAASLSMVLAEDAAAPAPGPSSGASATLPVIGTLLGASAASLIAYCLQ