CuGenDBv2

Gene ID	Spg020362
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	pentatricopeptide repeat-containing protein At1g80550, mitochondrial
Genome location	scaffold1:27780879..27783689
RNA-Seq Expression	Spg020362
Synteny	Spg020362
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575615.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-21

96.49

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

KAG7014158.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-21

96.49

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

XP_022148858.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Momordica charantia]

3.4e-22

100

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

XP_023522861.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucurbita pepo subsp. pepo]

8.3e-21

94.74

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMV KGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

XP_038896131.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Benincasa hispida]

3.4e-22

100

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBR1 Uncharacterized protein

2.6e-20

92.98

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGT+M+NGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

A0A1S3CFA1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

4.0e-21

96.49

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

A0A5A7UVK9 Pentatricopeptide repeat-containing protein

4.0e-21

96.49

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNE AYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

A0A6J1D599 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

1.6e-22

100

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

A0A6J1GNU3 pentatricopeptide repeat-containing protein At1g80550, mitochondrial

6.8e-21

94.74

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG
        MEELGCSP+ESAYN+LIDALVEKGMIDMARKYDEEMVAKGLSPKLR ELGTKMVNGG
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGG

SwissProt top hits

e value

%identity

Alignment

Q8LDU5 Pentatricopeptide repeat-containing protein At4g01400, mitochondrial

3.9e-05

53.85

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Query:  GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP
        GCSPN  +Y  LI  L ++GM D  +KY EEM++KG SP
Subjt:  GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP

Q9M8M3 Pentatricopeptide repeat-containing protein At1g80550, mitochondrial

2.8e-11

56.36

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN
        M+E G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP+ R EL  K ++
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN

Arabidopsis top hits

e value

%identity

Alignment

AT1G80550.1 Pentatricopeptide repeat (PPR) superfamily protein

2.0e-12

56.36

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Query:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN
        M+E G +P+ +AYNA+IDAL++KGM+DMAR+Y+EEM+ +GLSP+ R EL  K ++
Subjt:  MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVN

AT2G15980.1 Tetratricopeptide repeat (TPR)-like superfamily protein

9.8e-04

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Query:  EELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGL
        EE+GCSPN  +YN L++A   +G++  A K  EEM  +G+
Subjt:  EELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGL

AT4G01400.3 FUNCTIONS IN: molecular_function unknown

2.7e-06

53.85

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Query:  GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP
        GCSPN  +Y  LI  L ++GM D  +KY EEM++KG SP
Subjt:  GCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSP

Sequences

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CDS sequence

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ATGGAGGAACTTGGGTGTAGTCCAAATGAGTCTGCTTACAATGCTTTGATTGATGCTCTTGTGGAGAAGGGCATGATAGATATGGCTAGGAAGTACGATGAAGAAATGGT
AGCGAAGGGTCTTTCGCCTAAGCTAAGAGAGGAATTAGGGACAAAGATGGTGAATGGTGGCTCCAATGGGCTTTTTGGACTTTTGAGTGTGAAGTTGCCCATAGAGTGTT
ACTCTGCCCTTAGTTTTGAATTTGGAACGCCCAATGTAAAAGACATTGGAAGGGAAACGGGGGAAGACGTGGCCTACAAGACAGTAAACCTGCACACCGGTGTGGTGCTA
GCCACACCGCCTCCGATGCTTAAGTCAGAAAACGGTTTCAAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGTTGGAGGCTGCAGGGACCGAACGA
AGTCGGAGGGACTCGGCCCATAGCCGAGGCAGACCATGGGCCTCGCCCTCAGCTGGTCGAGGCCGAGCAGGGGGTCGGGCCAAAAGCCCGACCCCTTCGGTCTTGGCCCG
TCCTACTCGTCGGTTTCGCCTCTAGAGTCCATCTCTCAGCCCTATTTCTGTCCGATTGTCCTCGTCAGCGAGTACATCGGAGTGGTCCAAAATTACCTATAACAGATAGA
GTCGCTCAATAA

mRNA sequence

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Protein sequence

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MEELGCSPNESAYNALIDALVEKGMIDMARKYDEEMVAKGLSPKLREELGTKMVNGGSNGLFGLLSVKLPIECYSALSFEFGTPNVKDIGRETGEDVAYKTVNLHTGVVL
ATPPPMLKSENGFKEFGGVSGQTRRNRGGWRLQGPNEVGGTRPIAEADHGPRPQLVEAEQGVGPKARPLRSWPVLLVGFASRVHLSALFLSDCPRQRVHRSGPKLPITDR
VAQ

Spg020362 (gene) of Sponge gourd (cylindrica) v1 genome