; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020385 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020385
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:34244327..34257866
RNA-Seq ExpressionSpg020385
SyntenySpg020385
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]9.5e-1049.49Show/hide
Query:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA
        V+K NQKLYL   + +        +  E D  VI   S L  L   +  VEIELP+PDT+PTSAESSG++SSTW+ELY ESVH+   +L  KP   RAA
Subjt:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]3.3e-1850.85Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        +YKLNQKLYLVSC VFENEEF VY INFG VLRKLWVLEVR                                          VEIELP P+ +PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSSTWVELYIESVHI
        S ++SSTW+ELY E VH+
Subjt:  SGTSSSTWVELYIESVHI

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]7.3e-1850.85Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        V++ NQ LYLVSCRVF +E+F VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSSTWVELYIESVHI
        SG++SSTW+ELYIESVH+
Subjt:  SGTSSSTWVELYIESVHI

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.1e-1046.73Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        V++ NQ LYLVSCRVF +E+F VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSST
        S ++SS+
Subjt:  SGTSSST

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]9.5e-1049.49Show/hide
Query:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA
        V+K NQKLYL   + +        +  E D  VI   S L  L   +  VEIELP+PDT+PTSAESSG++SSTW+ELY ESVH+   +L  KP   RAA
Subjt:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.6e-1049.49Show/hide
Query:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA
        V+K NQKLYL   + +        +  E D  VI   S L  L   +  VEIELP+PDT+PTSAESSG++SSTW+ELY ESVH+   +L  KP   RAA
Subjt:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA

A0A5A7UFD2 Uncharacterized protein1.6e-1850.85Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        +YKLNQKLYLVSC VFENEEF VY INFG VLRKLWVLEVR                                          VEIELP P+ +PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSSTWVELYIESVHI
        S ++SSTW+ELY E VH+
Subjt:  SGTSSSTWVELYIESVHI

A0A5A7V5Z6 Uncharacterized protein3.5e-1850.85Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        V++ NQ LYLVSCRVF +E+F VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSSTWVELYIESVHI
        SG++SSTW+ELYIESVH+
Subjt:  SGTSSSTWVELYIESVHI

A0A5D3BQ75 Uncharacterized protein5.5e-1146.73Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES
        V++ NQ LYLVSCRVF +E+F VY INFG VLRKLWVLEVR                                          VEIELPVPDT PTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTMPTSAES

Query:  SGTSSST
        S ++SS+
Subjt:  SGTSSST

A0A5D3DR18 Gag/pol protein4.6e-1049.49Show/hide
Query:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA
        V+K NQKLYL   + +        +  E D  VI   S L  L   +  VEIELP+PDT+PTSAESSG++SSTW+ELY ESVH+   +L  KP   RAA
Subjt:  VYKLNQKLYLVSCRVF--------ENEEFDVYVINFGSVLRKLWVLEVRVEIELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCGCTCGCCGCCGACGGTAAAGCTTCGCTCTCTCTCACGTGTGGGTTTCTTTGTTTCTTCCCCTCGCCCGTTCTCACTCTCTCTCTCTCTTATGTATCAGTTGT
CGCCGCCGCCTTCTCCGTTGAGAACTGCCGCACGTCGATTTTTACCTCACGCCGCCGTCTGCTTCACCGCGTGTCGCCGTCTATTCGCCGCCGCACACGAGCCGCCGCCG
ATCTGTCCGTTGCTGTCGTTCGATTTTTAAGCTTTGCTTCTAAAGAACTAGTTGGTAGTGGTTCCGCTTTAGAGATCATGCCTCCCCGTGAACGAGGCCGTGGAAAAGGC
CGTGGTAGGGGTCGTACAGCCCCTGAAGCAGTTGTGCCACCATTGGGGCATGGAGATAATCTACCAGAAGATCCGCAAGTTGAACAGCCGGGACCTGCAGCAGAACCTGT
CACAGTGGATGCCATCCAGGCAATTCATAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGCTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATGTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATC
GAGCTCCCGGTGCCTGATACAATGCCAACGTCTGCTGAAAGTTCCGGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTT
ACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTCCTCTCACACTGTCTTCTCCGGCGAGCATCCATCATCGGCGCAGACAACTCCGACAGCACCTCCCTCGGGTCG
TCATTTTCGGCGAACAGATCAAGTCTGCGACGGGTGCAGTGAACTTCTCCGGTGGCGCGCGTCTTCCAGCGTTTTTTCTCGACGGTTTCAAGCGGCGTCGTCACTGTGGG
TTTCCGGCGGCTGGGCAGCGTAGGTGTGGTGGTACTGTGAGTGATGAGACTCCTATTATTGGATATCTCGATGGTAGCATGGTATATGAGTTACTTGAAGGTGATAAGAA
AATTTGGGATTTTCTATTCGTATGTCGTTATGCTGCCGAATTTTCAATAGCACTACAGCACGGGATCGTGCGCTCTATCAGTCTCAGGACGGTGTTGAGCCAGGCACGAG
ATCGTGCGCCAGATGGCACTCAGGCATGTTTTCATGCACTACATTGCTCCACCGTATTTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCGCTCGCCGCCGACGGTAAAGCTTCGCTCTCTCTCACGTGTGGGTTTCTTTGTTTCTTCCCCTCGCCCGTTCTCACTCTCTCTCTCTCTTATGTATCAGTTGT
CGCCGCCGCCTTCTCCGTTGAGAACTGCCGCACGTCGATTTTTACCTCACGCCGCCGTCTGCTTCACCGCGTGTCGCCGTCTATTCGCCGCCGCACACGAGCCGCCGCCG
ATCTGTCCGTTGCTGTCGTTCGATTTTTAAGCTTTGCTTCTAAAGAACTAGTTGGTAGTGGTTCCGCTTTAGAGATCATGCCTCCCCGTGAACGAGGCCGTGGAAAAGGC
CGTGGTAGGGGTCGTACAGCCCCTGAAGCAGTTGTGCCACCATTGGGGCATGGAGATAATCTACCAGAAGATCCGCAAGTTGAACAGCCGGGACCTGCAGCAGAACCTGT
CACAGTGGATGCCATCCAGGCAATTCATAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGCTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATGTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATC
GAGCTCCCGGTGCCTGATACAATGCCAACGTCTGCTGAAAGTTCCGGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTT
ACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTCCTCTCACACTGTCTTCTCCGGCGAGCATCCATCATCGGCGCAGACAACTCCGACAGCACCTCCCTCGGGTCG
TCATTTTCGGCGAACAGATCAAGTCTGCGACGGGTGCAGTGAACTTCTCCGGTGGCGCGCGTCTTCCAGCGTTTTTTCTCGACGGTTTCAAGCGGCGTCGTCACTGTGGG
TTTCCGGCGGCTGGGCAGCGTAGGTGTGGTGGTACTGTGAGTGATGAGACTCCTATTATTGGATATCTCGATGGTAGCATGGTATATGAGTTACTTGAAGGTGATAAGAA
AATTTGGGATTTTCTATTCGTATGTCGTTATGCTGCCGAATTTTCAATAGCACTACAGCACGGGATCGTGCGCTCTATCAGTCTCAGGACGGTGTTGAGCCAGGCACGAG
ATCGTGCGCCAGATGGCACTCAGGCATGTTTTCATGCACTACATTGCTCCACCGTATTTTCATGA
Protein sequenceShow/hide protein sequence
MESLAADGKASLSLTCGFLCFFPSPVLTLSLSYVSVVAAAFSVENCRTSIFTSRRRLLHRVSPSIRRRTRAAADLSVAVVRFLSFASKELVGSGSALEIMPPRERGRGKG
RGRGRTAPEAVVPPLGHGDNLPEDPQVEQPGPAAEPVTVDAIQAIHRIFEQSRRISGFLCCFEHSGVYKLNQKLYLVSCRVFENEEFDVYVINFGSVLRKLWVLEVRVEI
ELPVPDTMPTSAESSGTSSSTWVELYIESVHIVNVLLLSKPGYVRAAPCPLTLSSPASIHHRRRQLRQHLPRVVIFGEQIKSATGAVNFSGGARLPAFFLDGFKRRRHCG
FPAAGQRRCGGTVSDETPIIGYLDGSMVYELLEGDKKIWDFLFVCRYAAEFSIALQHGIVRSISLRTVLSQARDRAPDGTQACFHALHCSTVFS