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Spg020399 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020399
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionlariat debranching enzyme
Genome locationscaffold1:35460983..35463214
RNA-Seq ExpressionSpg020399
SyntenySpg020399
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008419 - RNA lariat debranching enzyme activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064874.1 lariat debranching enzyme isoform X1 [Cucumis melo var. makuwa]8.0e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

XP_008445281.1 PREDICTED: lariat debranching enzyme isoform X1 [Cucumis melo]8.0e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

XP_008445283.1 PREDICTED: lariat debranching enzyme isoform X2 [Cucumis melo]8.0e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

XP_011649851.1 lariat debranching enzyme isoform X1 [Cucumis sativus]1.0e-2491.67Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE

XP_031737272.1 lariat debranching enzyme isoform X2 [Cucumis sativus]1.0e-2491.67Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE

TrEMBL top hitse value%identityAlignment
A0A0A0LQG6 DBR1 domain-containing protein5.1e-2591.67Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE

A0A1S3BBU7 lariat debranching enzyme isoform X23.9e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

A0A1S3BD21 lariat debranching enzyme isoform X13.9e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

A0A5A7VC81 Lariat debranching enzyme isoform X13.9e-2575.95Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRS+YHVREYDVQKL QVEEPIDIFLSHDWPLGITDYGNWKQLV  KPFFEKE  E  R++G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

A0A6J1KTC9 lariat debranching enzyme isoform X33.3e-2474.68Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+E+TIRSVYHVREYDVQKL QVEEPIDIFLSHDWP+GITDYGNWKQLV  KPFFEKE  E  R +G   A++   K
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

SwissProt top hitse value%identityAlignment
Q6AU07 Lariat debranching enzyme2.3e-2263.29Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK
        PPY+ENTIRSVYHVR YDV KL  V+EP+DIF+SHDWPLGIT+YGNW++L+  K FFE+E   N R +G   A+   NK
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNK

Q6GPB8 Lariat debranching enzyme A9.2e-1657.81Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELEN
        PPY ++T+RS YHVR  +V KL+Q++EP+DIFLSHDWP  I  YGN KQL+  K FF +E  +N
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELEN

Q923B1 Lariat debranching enzyme1.2e-1557.81Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELEN
        PPY+ +TIRS+YHVR  +V KL+Q+++P+ IFLSHDWP  I  YGN KQL+ +K FF ++E+EN
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELEN

Q94K01 Lariat debranching enzyme4.3e-2171.67Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE
        PPY+E+TIRSVYHVR+YDVQKL Q+EEP+DIFLSHDWP+GITDYG+ + L+  KP+F +E
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE

Q9UK59 Lariat debranching enzyme1.1e-1654.88Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNKHLK
        PPY+ +TIRS+YHVR  +V KL+Q+++PIDIFLSHDWP  I  YGN KQL+ +K FF ++E+EN+  +G   AS+   +HLK
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNKHLK

Arabidopsis top hitse value%identityAlignment
AT4G31770.1 debranching enzyme 13.0e-2271.67Show/hide
Query:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE
        PPY+E+TIRSVYHVR+YDVQKL Q+EEP+DIFLSHDWP+GITDYG+ + L+  KP+F +E
Subjt:  PPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCGACCTTCGAATCTCCAAACCTAGCGACCCAGCGAACTGCAACACGAATCTCCACTTTTTCACCTCCATACGATGAGAATACTATAAGATCTGTTTACCATGT
TCGTGAATACGATGTTCAGAAGCTTAGGCAAGTCGAGGAACCCATTGACATTTTTCTTTCCCATGATTGGCCACTTGGCATCACCGATTATGGAAACTGGAAACAACTCG
TTATGTCCAAACCATTTTTTGAGAAGGAGGAGTTGGAAAATGATCGAAATGTTGGGATCTTGAAGGCGAGTGACACTAATAATAAACATTTGAAGGACATCAAGAGTGGA
TGCGAAAAGAAGCAAATATCAACAAAGTTAATTCTTAGGTTTGCTGAAAAGGTAATGCTCAATGACACCGGTATTTCCTTTCAACTACCTGTTGAGCTTTTTGGTTTCAG
TCGAAAGAGTTGTATCTTGCGAGAAGATATAATTGACGTTTGCTGCATGCAACAAGTTAAGACATTATCAATGGTGGCTTATATGGCTGCCCTTTACAAGTGGGAAATGT
TGAATGTGGATATTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCGACCTTCGAATCTCCAAACCTAGCGACCCAGCGAACTGCAACACGAATCTCCACTTTTTCACCTCCATACGATGAGAATACTATAAGATCTGTTTACCATGT
TCGTGAATACGATGTTCAGAAGCTTAGGCAAGTCGAGGAACCCATTGACATTTTTCTTTCCCATGATTGGCCACTTGGCATCACCGATTATGGAAACTGGAAACAACTCG
TTATGTCCAAACCATTTTTTGAGAAGGAGGAGTTGGAAAATGATCGAAATGTTGGGATCTTGAAGGCGAGTGACACTAATAATAAACATTTGAAGGACATCAAGAGTGGA
TGCGAAAAGAAGCAAATATCAACAAAGTTAATTCTTAGGTTTGCTGAAAAGGTAATGCTCAATGACACCGGTATTTCCTTTCAACTACCTGTTGAGCTTTTTGGTTTCAG
TCGAAAGAGTTGTATCTTGCGAGAAGATATAATTGACGTTTGCTGCATGCAACAAGTTAAGACATTATCAATGGTGGCTTATATGGCTGCCCTTTACAAGTGGGAAATGT
TGAATGTGGATATTATGTGA
Protein sequenceShow/hide protein sequence
MQATFESPNLATQRTATRISTFSPPYDENTIRSVYHVREYDVQKLRQVEEPIDIFLSHDWPLGITDYGNWKQLVMSKPFFEKEELENDRNVGILKASDTNNKHLKDIKSG
CEKKQISTKLILRFAEKVMLNDTGISFQLPVELFGFSRKSCILREDIIDVCCMQQVKTLSMVAYMAALYKWEMLNVDIM