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Spg020400 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020400
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:34375522..34377431
RNA-Seq ExpressionSpg020400
SyntenySpg020400
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025774.1 hypothetical protein E6C27_scaffold34G00210 [Cucumis melo var. makuwa]5.2e-1365.62Show/hide
Query:  FGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAES
        F   L    GN ++IS D+EP+A  YRVHTGY+ LLTLSVL DNDAVVEIE PVPD LP SAE+
Subjt:  FGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAES

KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.5e-0970Show/hide
Query:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRS
        D+EPEA  YRVHTGY+PLLTLSVLRDNDA+VEIE  VP+ L  S E+  S
Subjt:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRS

KAA0035087.1 putative signal anchor [Cucumis melo var. makuwa]2.2e-0857.97Show/hide
Query:  PENLESVLSVFGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLP
        P  L S L VF   LD  V   +    D+EPEA  YRVHTGYI LLTLSVL DNDA+VE+E  VPD +P
Subjt:  PENLESVLSVFGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLP

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.2e-0740.82Show/hide
Query:  KPTPTH--FQPTSSHIPHHFPSKISEHLRERVKEEEEE-------EFPENLES-VLSVFGAFLD---TLVGNPVFISSDIEPEAIWYRVHTGYI------
        KPT     FQ       HHF SK+SE+ +ERVKEEEEE       +  + ++S  L   GA ++    L+G   +    + P      + TG +      
Subjt:  KPTPTH--FQPTSSHIPHHFPSKISEHLRERVKEEEEE-------EFPENLES-VLSVFGAFLD---TLVGNPVFISSDIEPEAIWYRVHTGYI------

Query:  PLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESFRSSS
         L TLSVLRDNDAV           VEIELP+PDTLPT AESF S+S
Subjt:  PLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESFRSSS

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.3e-1043.26Show/hide
Query:  FQPTSSHIPHHFPSKISEHLRERVKEEEEE------EFPENLESVLSVFGAFL---DTLVGNPVFISS---------------DIEPEAIWYRVHTGYIP
        FQ       HHFPSK+ EH  ERVKEEEEE      E  +      S  G FL   D L    V  S+               D+ P      + TG + 
Subjt:  FQPTSSHIPHHFPSKISEHLRERVKEEEEE------EFPENLESVLSVFGAFL---DTLVGNPVFISS---------------DIEPEAIWYRVHTGYIP

Query:  ------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSS
              L TLSVLRDNDAVVEIELPVPD LPTSA+S  S+S
Subjt:  ------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7SJC7 Uncharacterized protein2.5e-1365.62Show/hide
Query:  FGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAES
        F   L    GN ++IS D+EP+A  YRVHTGY+ LLTLSVL DNDAVVEIE PVPD LP SAE+
Subjt:  FGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAES

A0A5A7SPZ6 DNA/RNA polymerases superfamily protein1.7e-0970Show/hide
Query:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRS
        D+EPEA  YRVHTGY+PLLTLSVLRDNDA+VEIE  VP+ L  S E+  S
Subjt:  DIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESFRS

A0A5A7T0I0 Putative signal anchor1.1e-0857.97Show/hide
Query:  PENLESVLSVFGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLP
        P  L S L VF   LD  V   +    D+EPEA  YRVHTGYI LLTLSVL DNDA+VE+E  VPD +P
Subjt:  PENLESVLSVFGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLP

A0A5A7UGD0 Uncharacterized protein1.6e-0740.82Show/hide
Query:  KPTPTH--FQPTSSHIPHHFPSKISEHLRERVKEEEEE-------EFPENLES-VLSVFGAFLD---TLVGNPVFISSDIEPEAIWYRVHTGYI------
        KPT     FQ       HHF SK+SE+ +ERVKEEEEE       +  + ++S  L   GA ++    L+G   +    + P      + TG +      
Subjt:  KPTPTH--FQPTSSHIPHHFPSKISEHLRERVKEEEEE-------EFPENLES-VLSVFGAFLD---TLVGNPVFISSDIEPEAIWYRVHTGYI------

Query:  PLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESFRSSS
         L TLSVLRDNDAV           VEIELP+PDTLPT AESF S+S
Subjt:  PLLTLSVLRDNDAV-----------VEIELPVPDTLPTSAESFRSSS

A0A5D3BZ50 Pentatricopeptide repeat-containing protein2.6e-1043.26Show/hide
Query:  FQPTSSHIPHHFPSKISEHLRERVKEEEEE------EFPENLESVLSVFGAFL---DTLVGNPVFISS---------------DIEPEAIWYRVHTGYIP
        FQ       HHFPSK+ EH  ERVKEEEEE      E  +      S  G FL   D L    V  S+               D+ P      + TG + 
Subjt:  FQPTSSHIPHHFPSKISEHLRERVKEEEEE------EFPENLESVLSVFGAFL---DTLVGNPVFISS---------------DIEPEAIWYRVHTGYIP

Query:  ------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSS
              L TLSVLRDNDAVVEIELPVPD LPTSA+S  S+S
Subjt:  ------LLTLSVLRDNDAVVEIELPVPDTLPTSAESFRSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGCAAAAAAAAAAAAAAAAGAGAGAAAATGGGAATGGACAGCACAAACCCACCACCGCCTAAGCCAACTCCTACCCATTTTCAGCCCACTTCCAGCCACATTCC
TCATCATTTTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAT
TTCTGGACACATTGGTTGGGAATCCCGTTTTCATTTCTTCAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTA
CTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAGCTCC
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGCAAAAAAAAAAAAAAAAGAGAGAAAATGGGAATGGACAGCACAAACCCACCACCGCCTAAGCCAACTCCTACCCATTTTCAGCCCACTTCCAGCCACATTCC
TCATCATTTTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAT
TTCTGGACACATTGGTTGGGAATCCCGTTTTCATTTCTTCAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTA
CTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTCAGATCAAGCTCC
Protein sequenceShow/hide protein sequence
MKSKKKKKREKMGMDSTNPPPPKPTPTHFQPTSSHIPHHFPSKISEHLRERVKEEEEEEFPENLESVLSVFGAFLDTLVGNPVFISSDIEPEAIWYRVHTGYIPLLTLSV
LRDNDAVVEIELPVPDTLPTSAESFRSSS