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Spg020416 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020416
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:34422917..34428160
RNA-Seq ExpressionSpg020416
SyntenySpg020416
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2449.02Show/hide
Query:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LV S  L I+          L     WPRGNR  LQTG+LDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG
         ESVH+  + +   + +  S          +  D V WLHAIFRAK AGGPGG
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.3e-2554.74Show/hide
Query:  EEFRGFESTGFSSKPGGSLVLSGVLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--
        EE RG EST F SK GG LV S  L           SI PRGNR +L TGKLDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +     
Subjt:  EEFRGFESTGFSSKPGGSLVLSGVLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--

Query:  --------EGQRVSLEEDGVRWLHAIFRAKLAGGPGG
                EG    +  D + WLHA+F AK AG PGG
Subjt:  --------EGQRVSLEEDGVRWLHAIFRAKLAGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.1e-2345.14Show/hide
Query:  GFESTGFSSKPGGSLVLSG----------------VLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKT---------------VEIELPVPDTLPTSAESS
        G +STGFSSKPGG LV S                 VL +R        S  PRGNR SLQT +LDKT               V IELPVPD LPTSAESS
Subjt:  GFESTGFSSKPGGSLVLSG----------------VLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKT---------------VEIELPVPDTLPTSAESS

Query:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS
         ++SSTW+ELY ESVH+             ++++FNV  G    +  D V WLHA+FRAK  GGPGG    W +S
Subjt:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.1e-2750.62Show/hide
Query:  GFESTGFSSKPGGSLVLSGVLCIRGCTSLIRS-SIWPRGNRSSLQTGKLDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESV
        G +STGFSSKPGG LVLS  L I     L +   + PRGNR SLQTG+LDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESV
Subjt:  GFESTGFSSKPGGSLVLSGVLCIRGCTSLIRS-SIWPRGNRSSLQTGKLDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESV

Query:  HI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS
        H+             ++++FNV  G    +  D V WLHA+FRAK  GGPGG    W +S
Subjt:  HI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2449.02Show/hide
Query:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LV S  L I+          L     WPRGNR  LQTG+LDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG
         ESVH+  + +   + +  S          +  D V WLHAIFRAK AGGPGG
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein5.5e-2549.02Show/hide
Query:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LV S  L I+          L     WPRGNR  LQTG+LDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG
         ESVH+  + +   + +  S          +  D V WLHAIFRAK AGGPGG
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein6.5e-2654.74Show/hide
Query:  EEFRGFESTGFSSKPGGSLVLSGVLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--
        EE RG EST F SK GG LV S  L           SI PRGNR +L TGKLDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  + +     
Subjt:  EEFRGFESTGFSSKPGGSLVLSGVLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ--

Query:  --------EGQRVSLEEDGVRWLHAIFRAKLAGGPGG
                EG    +  D + WLHA+F AK AG PGG
Subjt:  --------EGQRVSLEEDGVRWLHAIFRAKLAGGPGG

A0A5A7UT17 CCHC-type domain-containing protein1.0e-2345.14Show/hide
Query:  GFESTGFSSKPGGSLVLSG----------------VLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKT---------------VEIELPVPDTLPTSAESS
        G +STGFSSKPGG LV S                 VL +R        S  PRGNR SLQT +LDKT               V IELPVPD LPTSAESS
Subjt:  GFESTGFSSKPGGSLVLSG----------------VLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKT---------------VEIELPVPDTLPTSAESS

Query:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS
         ++SSTW+ELY ESVH+             ++++FNV  G    +  D V WLHA+FRAK  GGPGG    W +S
Subjt:  RTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS

A0A5D3CJX3 CCHC-type domain-containing protein5.3e-2850.62Show/hide
Query:  GFESTGFSSKPGGSLVLSGVLCIRGCTSLIRS-SIWPRGNRSSLQTGKLDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESV
        G +STGFSSKPGG LVLS  L I     L +   + PRGNR SLQTG+LDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ESV
Subjt:  GFESTGFSSKPGGSLVLSGVLCIRGCTSLIRS-SIWPRGNRSSLQTGKLDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESV

Query:  HI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS
        H+             ++++FNV  G    +  D V WLHA+FRAK  GGPGG    W +S
Subjt:  HI-------------VNVLFNVQEGQRVSLEEDGVRWLHAIFRAKLAGGPGGDDGLWNTS

A0A5D3DR18 Gag/pol protein5.5e-2549.02Show/hide
Query:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY
        STGFSSKPGG LV S  L I+          L     WPRGNR  LQTG+LDK                  VEIELP+PDTLPTSAESS ++SSTW+ELY
Subjt:  STGFSSKPGGSLVLSGVLCIRGCTS------LIRSSIWPRGNRSSLQTGKLDK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG
         ESVH+  + +   + +  S          +  D V WLHAIFRAK AGGPGG
Subjt:  IESVHIVNVLFNVQEGQRVS----------LEEDGVRWLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCAGAGAATTCCCCTGAAGGCTCCTTAGACTCCCACCAGTCTCTTGCCTCTAGAAGTCTCAGAGTCATACCGGTATTAAACAAAATTAACTACGAATCGGTCCC
AATTCGCATCCGCTTAACAAAATTAGGGAATTCCAATCCTACAATTAGTATCAGAGCCGATCGTAATTCTAATTTTGTTTCTCCAAAATTTGCATTGGTTTTGCTCGATT
CAAGCTATTTTGGACTGGTTCAGCACATTTCTTGTCGGTTCGAAGGGTTTGGACGCGATTCGAGGCTTGTTCGAGCTGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAA
GAAGAAGAATTTCGTGGTTTTGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTGTCTGGTGTTTTGTGCATTCGGGGGTGTACAAGTCTAATCAGAAG
CTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGGT
GTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATGACGGTTTATGGAACACCTCTTACCTGGGAACTGACCCGGAATACCTGAGTTT
AATTAATCATAGCTTAATGAGACTTGTGTGGGAGGACAATTACAAAATGAGATTTAAATCAAGTTTTACTCATATGTCCCTATATTCACAACATGAAATTCATGCTCGGC
TTCGTGTCGCCTTGGGTGCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTTAATAACAAGGTGAATGGGGAAAGTGTCTATAGTAAGTGGGAGCGGGACACGTGTCAACGT
ATCCCTCGGTCTCCAACCCTAGGTCACACCGTGAGAGTTCTATGGTCCGCCTGCGTGTTGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCAGAGAATTCCCCTGAAGGCTCCTTAGACTCCCACCAGTCTCTTGCCTCTAGAAGTCTCAGAGTCATACCGGTATTAAACAAAATTAACTACGAATCGGTCCC
AATTCGCATCCGCTTAACAAAATTAGGGAATTCCAATCCTACAATTAGTATCAGAGCCGATCGTAATTCTAATTTTGTTTCTCCAAAATTTGCATTGGTTTTGCTCGATT
CAAGCTATTTTGGACTGGTTCAGCACATTTCTTGTCGGTTCGAAGGGTTTGGACGCGATTCGAGGCTTGTTCGAGCTGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAA
GAAGAAGAATTTCGTGGTTTTGAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTGTCTGGTGTTTTGTGCATTCGGGGGTGTACAAGTCTAATCAGAAG
CTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGAAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCAGAACAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGGT
GTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGATGACGGTTTATGGAACACCTCTTACCTGGGAACTGACCCGGAATACCTGAGTTT
AATTAATCATAGCTTAATGAGACTTGTGTGGGAGGACAATTACAAAATGAGATTTAAATCAAGTTTTACTCATATGTCCCTATATTCACAACATGAAATTCATGCTCGGC
TTCGTGTCGCCTTGGGTGCGGCCTCCCTTCGGAAAGTGTTTGCATGGGTTAATAACAAGGTGAATGGGGAAAGTGTCTATAGTAAGTGGGAGCGGGACACGTGTCAACGT
ATCCCTCGGTCTCCAACCCTAGGTCACACCGTGAGAGTTCTATGGTCCGCCTGCGTGTTGCCCTAG
Protein sequenceShow/hide protein sequence
MLSENSPEGSLDSHQSLASRSLRVIPVLNKINYESVPIRIRLTKLGNSNPTISIRADRNSNFVSPKFALVLLDSSYFGLVQHISCRFEGFGRDSRLVRAEHFKERVKEEE
EEEFRGFESTGFSSKPGGSLVLSGVLCIRGCTSLIRSSIWPRGNRSSLQTGKLDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDG
VRWLHAIFRAKLAGGPGGDDGLWNTSYLGTDPEYLSLINHSLMRLVWEDNYKMRFKSSFTHMSLYSQHEIHARLRVALGAASLRKVFAWVNNKVNGESVYSKWERDTCQR
IPRSPTLGHTVRVLWSACVLP