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Spg020429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:34696792..34698620
RNA-Seq ExpressionSpg020429
SyntenySpg020429
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.5e-0842.45Show/hide
Query:  IRKAHAKPAIAESGC-----------------KTVRCRVFDNEECDVYFINFGSVLRK-------LWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVEL
        I K +AKPAIAESGC                 +    R        + F +  S+L +          L+  VEIELPVPDTLPTSAESS+S+S+TW+EL
Subjt:  IRKAHAKPAIAESGC-----------------KTVRCRVFDNEECDVYFINFGSVLRK-------LWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVEL

Query:  YIESVY
        Y ESV+
Subjt:  YIESVY

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]3.3e-1246.73Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE
        V C VF+NEE  VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAESSRS+S+TW+E
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE

Query:  LYIESVY
        LY E V+
Subjt:  LYIESVY

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]5.3e-1037.27Show/hide
Query:  PPQPRLITNLFLVIFSHISSSFFIQLSEHITERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCK---------------TVRCR---------------
        P   +LI     ++F H  SS   +LSE+  ERVK EEEEEFRGLRLKK++K      +   G                 T+R R               
Subjt:  PPQPRLITNLFLVIFSHISSSFFIQLSEHITERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCK---------------TVRCR---------------

Query:  VFDNEECDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        +F      V   N   ++        +VEIELP+PDTLPT AES  S+S+TW+ELY ESV+
Subjt:  VFDNEECDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]2.0e-1246.55Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE
        V CRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ESS S+S+TW+E
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE

Query:  LYIESV------YYVN
        LYIESV      YY N
Subjt:  LYIESV------YYVN

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]3.2e-0744.33Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNT
        V CRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS S+S++
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNT

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein3.2e-0842.45Show/hide
Query:  IRKAHAKPAIAESGC-----------------KTVRCRVFDNEECDVYFINFGSVLRK-------LWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVEL
        I K +AKPAIAESGC                 +    R        + F +  S+L +          L+  VEIELPVPDTLPTSAESS+S+S+TW+EL
Subjt:  IRKAHAKPAIAESGC-----------------KTVRCRVFDNEECDVYFINFGSVLRK-------LWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVEL

Query:  YIESVY
        Y ESV+
Subjt:  YIESVY

A0A5A7UFD2 Uncharacterized protein1.6e-1246.73Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE
        V C VF+NEE  VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAESSRS+S+TW+E
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE

Query:  LYIESVY
        LY E V+
Subjt:  LYIESVY

A0A5A7UGD0 Uncharacterized protein2.6e-1037.27Show/hide
Query:  PPQPRLITNLFLVIFSHISSSFFIQLSEHITERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCK---------------TVRCR---------------
        P   +LI     ++F H  SS   +LSE+  ERVK EEEEEFRGLRLKK++K      +   G                 T+R R               
Subjt:  PPQPRLITNLFLVIFSHISSSFFIQLSEHITERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCK---------------TVRCR---------------

Query:  VFDNEECDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        +F      V   N   ++        +VEIELP+PDTLPT AES  S+S+TW+ELY ESV+
Subjt:  VFDNEECDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5A7V5Z6 Uncharacterized protein9.5e-1346.55Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE
        V CRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ESS S+S+TW+E
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNTWVE

Query:  LYIESV------YYVN
        LYIESV      YY N
Subjt:  LYIESV------YYVN

A0A5D3BQ75 Uncharacterized protein1.6e-0744.33Show/hide
Query:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNT
        V CRVF +E+  VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTSAESS S+S++
Subjt:  VRCRVFDNEECDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAESSRSSSNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAATGCCCCACCACAGCCTAGGCTGATCACCAACCTATTTTTAGTCATTTTCAGCCACATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACATTACGGA
GAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTACGTT
GTAGAGTGTTTGATAATGAAGAGTGTGATGTGTATTTCATTAATTTTGGTTCCGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAAT
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAATGCCCCACCACAGCCTAGGCTGATCACCAACCTATTTTTAGTCATTTTCAGCCACATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACATTACGGA
GAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTACGTT
GTAGAGTGTTTGATAATGAAGAGTGTGATGTGTATTTCATTAATTTTGGTTCCGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCT
GATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAAT
Protein sequenceShow/hide protein sequence
MDSNAPPQPRLITNLFLVIFSHISSSFFIQLSEHITERVKEEEEEEFRGLRLKKIRKAHAKPAIAESGCKTVRCRVFDNEECDVYFINFGSVLRKLWVLEVRVEIELPVP
DTLPTSAESSRSSSNTWVELYIESVYYVN