; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020430 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020430
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold1:35570736..35572991
RNA-Seq ExpressionSpg020430
SyntenySpg020430
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.0e-2750.99Show/hide
Query:  VYKSNQKLYLV-SCRV--FENEECDVPRGNKSSRQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        ++KSNQKLYLV   R+   EN +  +PRGN+ S QT ELDKT               V IELPVPD LPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLV-SCRV--FENEECDVPRGNKSSRQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-2552.05Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        V+KSNQKLYL      ++ + DV  RGN+SS Q+GELD T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
             ++++FSV  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.5e-2650Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----------
        ++K NQKLYL             PRGN+ S QTGELDKTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+           
Subjt:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----------

Query:  --VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
          ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  --VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]8.9e-2450.35Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFSVQE
        V+KSNQKLYL         + + PRGN+   QTGELDK                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+  + +   +
Subjt:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFSVQE

Query:  GQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGVT
         +  S          +  DDV WLHAIFRAK AGGPGGGVT
Subjt:  GQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]8.1e-2552.05Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        V+KSNQKLYL      ++ + DV  RGN+SS Q+GELD T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
             ++++FSV  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein4.3e-2450.35Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFSVQE
        V+KSNQKLYL         + + PRGN+   QTGELDK                  VEIELP+PDTLPTSAESS S+SSTW+ELY ESVH+  + +   +
Subjt:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFSVQE

Query:  GQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGVT
         +  S          +  DDV WLHAIFRAK AGGPGGGVT
Subjt:  GQRVS----------LEEDDVRWLHAIFRAKLAGGPGGGVT

A0A5A7UT17 CCHC-type domain-containing protein2.4e-2750.99Show/hide
Query:  VYKSNQKLYLV-SCRV--FENEECDVPRGNKSSRQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        ++KSNQKLYLV   R+   EN +  +PRGN+ S QT ELDKT               V IELPVPD LPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLV-SCRV--FENEECDVPRGNKSSRQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

A0A5A7V9N3 Reverse transcriptase3.9e-2552.05Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        V+KSNQKLYL      ++ + DV  RGN+SS Q+GELD T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
             ++++FSV  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

A0A5D3CJX3 CCHC-type domain-containing protein4.6e-2650Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----------
        ++K NQKLYL             PRGN+ S QTGELDKTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+           
Subjt:  VYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-----------

Query:  --VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
          ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  --VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

A0A5D3DSY7 Putative Retrotransposon protein3.9e-2552.05Show/hide
Query:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------
        V+KSNQKLYL      ++ + DV  RGN+SS Q+GELD T                 VEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+        
Subjt:  VYKSNQKLYLVSCRVFENEECDVP-RGNKSSRQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI--------

Query:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
             ++++FSV  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  -----VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGT
AAGTTGTAGAGTGTTCGAGAATGAAGAGTGTGATGTGCCAAGAGGAAATAAGTCGAGTCGACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTG
ATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGT
CAGCGGGTATCGTTAGAGGAGGATGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTTTGAGCATTCGGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGT
AAGTTGTAGAGTGTTCGAGAATGAAGAGTGTGATGTGCCAAGAGGAAATAAGTCGAGTCGACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTG
ATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGTTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGT
CAGCGGGTATCGTTAGAGGAGGATGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTA
G
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRANQEDLWCFEHSGVYKSNQKLYLVSCRVFENEECDVPRGNKSSRQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFSVQEG
QRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS