; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020456 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020456
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsquamosa promoter-binding-like protein 13A
Genome locationscaffold1:35940892..35945973
RNA-Seq ExpressionSpg020456
SyntenySpg020456
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042930.1 squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa]2.6e-2986.84Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

KAG6588893.1 Squamosa promoter-binding-like protein 13B, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2967.62Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQIAKVSFDSSHFRCYWER
        D+DLSN K+YHRRH+VC+ HSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL I    F    K     S   C+ ++
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQIAKVSFDSSHFRCYWER

Query:  LAAGI
        L   I
Subjt:  LAAGI

XP_004148013.1 squamosa promoter-binding-like protein 13A [Cucumis sativus]1.5e-2982.72Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIF
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +    F
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIF

XP_008450118.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo]2.6e-2986.84Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

XP_022935263.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata]3.4e-2985.53Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        D+DL N K+YHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

TrEMBL top hitse value%identityAlignment
A0A0A0L895 SBP-type domain-containing protein7.4e-3082.72Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIF
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +    F
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIF

A0A1S3BNK6 squamosa promoter-binding-like protein 13A1.3e-2986.84Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

A0A5D3C4M7 Squamosa promoter-binding-like protein 13A1.3e-2986.84Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        DTDL+N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

A0A6J1DV79 squamosa promoter-binding-like protein 13A3.7e-2986.67Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLL
        D+DL N KDYHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFH LGEFDEVKRSCRKRLDGHNRRRRKPQPESL+
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLL

A0A6J1FA23 squamosa promoter-binding-like protein 13A1.7e-2985.53Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI
        D+DL N K+YHRRH+VC+SHSKT VVMVRG+EKRFCQQ SRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLI

SwissProt top hitse value%identityAlignment
B9DI20 Squamosa promoter-binding-like protein 13A9.1e-2571.62Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVC+ HSKT VV + G ++RFCQQ SRFH L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

Q0J0K1 Squamosa promoter-binding-like protein 188.2e-2677.78Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        DLS  +DYHRRHKVC  HSKT VV+V G+E RFCQQ SRFH LGEFDE KRSCRKRLDGHNRRRRKPQ +S+
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

Q49I55 Teosinte glume architecture 14.1e-2569.14Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ
        DL   +DYHRRHKVC +HSKT VV+V G+E RFCQQ SRFH L EFD  KRSCRKRLDGHNRRRRKPQP+++     I SQ
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ

Q49I57 Teosinte glume architecture 14.1e-2569.14Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ
        DL   +DYHRRHKVC +HSKT VV+V G+E RFCQQ SRFH L EFD  KRSCRKRLDGHNRRRRKPQP+++     I SQ
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ

Q6YZE8 Squamosa promoter-binding-like protein 162.4e-2569.14Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ
        DLS  +DYHRRHKVC +HSKT +V+V G+E RFCQQ SRFH L EFDE KRSCRKRLDGHNRRRRKPQP+ +     + SQ
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQ

Arabidopsis top hitse value%identityAlignment
AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein4.3e-2271.64Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKP
        DLS+ KDYH+RH+VC +HSKT VV+V G E+RFCQQ SRFH L EFD+ KRSCR+RL GHN RRRKP
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKP

AT2G42200.1 squamosa promoter binding protein-like 92.5e-2257.3Show/hide
Query:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQIAKVSFDS
        DL+N K Y+ RH+VC  HSKT  V V G E+RFCQQ SRFH L EFD  KRSCR+RL GHN RRRKPQP SL ++   + +IA   +++
Subjt:  DLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESLLIVQGIFSQIAKVSFDS

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein6.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVC+ HSKT VV + G ++RFCQQ SRFH L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein6.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVC+ HSKT VV + G ++RFCQQ SRFH L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein6.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVC+ HSKT VV + G ++RFCQQ SRFH L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRKPQPESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTCATGGTGTGCTTTGCAGAAACATTGTCTCTGATAAGACGTACCTCGTTCTCTTGAAAGACAACAGTCGACCCATAAGAAGCGGGCTCAGCTTCTTAGTAGAAGAGCC
TAAGACCGGTCGTCTTGCAGCCCAATGGCCCCCACCACTAAATCTGCATACCATTTCTGATTGGTCCGTAGATAGGCCTCTGGACCAATATTCTAAGGCTTGGTTTCTAG
AATCTTCAATCCATACACAAAATCCTAGTCGACATCCAGAGGTGACGTTAGTGCACCGAATAATTGATGGATCAATTCGTTGGGAATCCGCATTGAAAATTTCAAGCGAA
TTTCTTTTTATTCCTCGCTATTGGGAGTGGCTAGAATTTGTTGTTGGTCGGAATGAAGAGAGCATCTTTGGTACTCTTTTGCTCTGTTTCTCCTCATCGATTTCTTTCTT
CAAAATACCATATTTTGACACTGACTTGAGCAATTTCAAGGATTATCATCGGCGCCATAAGGTCTGCAATTCGCACTCAAAAACCCTTGTTGTGATGGTGAGGGGCAAGG
AGAAGCGATTCTGTCAACAGCGCAGCAGGTTCCATCCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGTTGTAGAAAGAGGCTTGATGGGCACAATCGGCGTAGGAGGAAG
CCTCAGCCTGAATCCTTGTTGATAGTTCAAGGGATTTTCTCTCAAATTGCAAAAGTTAGTTTTGACTCTTCGCATTTTCGGTGTTACTGGGAGAGATTAGCAGCGGGTAT
TGGGTGTTTTCGTGATGTTCAAAATCTTATTCACAAAGGATGTGCAGATGGTATACTTGTTCCAGGTGGTTTTGGTGATAGAGGAGTGGAAGCAAAAGTTGCACTTCAAT
ACTTGGCTGCTCTTGGTGGTGGCAATGGCAAAGATGATAGAATCCCACGGGCACATGTCTGGAAGCATTTGGGAATGCTAAGACCTTCAGGAACAACAATGCTAGCAGAT
TTAACAGGGAAGATATGTGGTGTTGTAATCCAGACTTGTAAGAAAACTTTTATGCTGGAACTATTGTGA
mRNA sequenceShow/hide mRNA sequence
AGTCATGGTGTGCTTTGCAGAAACATTGTCTCTGATAAGACGTACCTCGTTCTCTTGAAAGACAACAGTCGACCCATAAGAAGCGGGCTCAGCTTCTTAGTAGAAGAGCC
TAAGACCGGTCGTCTTGCAGCCCAATGGCCCCCACCACTAAATCTGCATACCATTTCTGATTGGTCCGTAGATAGGCCTCTGGACCAATATTCTAAGGCTTGGTTTCTAG
AATCTTCAATCCATACACAAAATCCTAGTCGACATCCAGAGGTGACGTTAGTGCACCGAATAATTGATGGATCAATTCGTTGGGAATCCGCATTGAAAATTTCAAGCGAA
TTTCTTTTTATTCCTCGCTATTGGGAGTGGCTAGAATTTGTTGTTGGTCGGAATGAAGAGAGCATCTTTGGTACTCTTTTGCTCTGTTTCTCCTCATCGATTTCTTTCTT
CAAAATACCATATTTTGACACTGACTTGAGCAATTTCAAGGATTATCATCGGCGCCATAAGGTCTGCAATTCGCACTCAAAAACCCTTGTTGTGATGGTGAGGGGCAAGG
AGAAGCGATTCTGTCAACAGCGCAGCAGGTTCCATCCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGTTGTAGAAAGAGGCTTGATGGGCACAATCGGCGTAGGAGGAAG
CCTCAGCCTGAATCCTTGTTGATAGTTCAAGGGATTTTCTCTCAAATTGCAAAAGTTAGTTTTGACTCTTCGCATTTTCGGTGTTACTGGGAGAGATTAGCAGCGGGTAT
TGGGTGTTTTCGTGATGTTCAAAATCTTATTCACAAAGGATGTGCAGATGGTATACTTGTTCCAGGTGGTTTTGGTGATAGAGGAGTGGAAGCAAAAGTTGCACTTCAAT
ACTTGGCTGCTCTTGGTGGTGGCAATGGCAAAGATGATAGAATCCCACGGGCACATGTCTGGAAGCATTTGGGAATGCTAAGACCTTCAGGAACAACAATGCTAGCAGAT
TTAACAGGGAAGATATGTGGTGTTGTAATCCAGACTTGTAAGAAAACTTTTATGCTGGAACTATTGTGA
Protein sequenceShow/hide protein sequence
SHGVLCRNIVSDKTYLVLLKDNSRPIRSGLSFLVEEPKTGRLAAQWPPPLNLHTISDWSVDRPLDQYSKAWFLESSIHTQNPSRHPEVTLVHRIIDGSIRWESALKISSE
FLFIPRYWEWLEFVVGRNEESIFGTLLLCFSSSISFFKIPYFDTDLSNFKDYHRRHKVCNSHSKTLVVMVRGKEKRFCQQRSRFHPLGEFDEVKRSCRKRLDGHNRRRRK
PQPESLLIVQGIFSQIAKVSFDSSHFRCYWERLAAGIGCFRDVQNLIHKGCADGILVPGGFGDRGVEAKVALQYLAALGGGNGKDDRIPRAHVWKHLGMLRPSGTTMLAD
LTGKICGVVIQTCKKTFMLELL