; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020477 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020477
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:36033480..36037991
RNA-Seq ExpressionSpg020477
SyntenySpg020477
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-2443.64Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+Q+NK KKKTR+ K V EE +DF  P   +TL ++FP RFL D Q E    V+
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE
        CH ++V+E++ +P  S         LS FN+ DLLSLPQE K++LI+AL+ S    ++A     E
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]6.2e-2546.31Show/hide
Query:  SQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHV
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+Q+NK KKKTR+ K + EE +DF      +TL ++FP RFL D Q E    V CH 
Subjt:  SQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHV

Query:  VDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS
        ++ +E++++P  S        DLS FN+ DLLSLPQE K +LI+AL+ S
Subjt:  VDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-2543.03Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ S  K  SIE++NEGW +V RR K+K + ++KES  +R+ +R+ K+Q+NK KKKTR+ K V EE +DF  P   +T+ + FP RFL D Q E  E ++
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE
        CH ++  E++ +P+ S        +LS FN+ DLLSLPQE K++LI+AL+ SG   +     A E
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.7e-2547.3Show/hide
Query:  QEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHVV
        QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+Q+NK KKKT++ K + EE +DF      +TL  +FP RFL D Q E  E V+CH +
Subjt:  QEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHVV

Query:  DVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS
        D +E++ +P  S        DL  FN+ DLLSLPQE K++LI+AL+ S
Subjt:  DVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS

KAA0057705.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-2444.03Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+Q+NK KKKTR+ K V EE +DF      + L ++FP RFL D Q E    V+
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDA
        CH ++  ++  +P  S        DLS FN+ DLLSLPQE K++LI+AL+ S    + A
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDA

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein6.7e-2543.64Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ S+EK   IE+++EGW +V RRKK+K +   KES  +R+ +R  K+Q+NK KKKTR+ K V EE +DF  P   +TL ++FP RFL D Q E    V+
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE
        CH ++V+E++ +P  S         LS FN+ DLLSLPQE K++LI+AL+ S    ++A     E
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE

A0A5A7TY01 Ty3-gypsy retrotransposon protein8.0e-2643.03Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ S  K  SIE++NEGW +V RR K+K + ++KES  +R+ +R+ K+Q+NK KKKTR+ K V EE +DF  P   +T+ + FP RFL D Q E  E ++
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE
        CH ++  E++ +P+ S        +LS FN+ DLLSLPQE K++LI+AL+ SG   +     A E
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVE

A0A5A7UVV7 Retrotransposon gag protein3.3e-2444.03Show/hide
Query:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS
        ++ SQEK   IE+++EGW +V RRKK+K +  +KESR +R+ +R+ K+Q+NK KKKTR+ K V EE +DF      + L ++FP RFL D Q E    V+
Subjt:  MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVS

Query:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDA
        CH ++  ++  +P  S        DLS FN+ DLLSLPQE K++LI+AL+ S    + A
Subjt:  CHVVDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDA

A0A5D3BE72 Ty3-gypsy retrotransposon protein1.8e-2547.3Show/hide
Query:  QEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHVV
        QEK  SIE ++EGWT+V RRKK+K +  +KE R +R+ +R  K+Q+NK KKKT++ K + EE +DF      +TL  +FP RFL D Q E  E V+CH +
Subjt:  QEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHVV

Query:  DVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS
        D +E++ +P  S        DL  FN+ DLLSLPQE K++LI+AL+ S
Subjt:  DVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS

A0A5D3BSG5 Uncharacterized protein3.0e-2546.31Show/hide
Query:  SQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHV
        SQEK   IE+++EGWT+V RRKK+K +  +KE R +R+ ++  K+Q+NK KKKTR+ K + EE +DF      +TL ++FP RFL D Q E    V CH 
Subjt:  SQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHV

Query:  VDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS
        ++ +E++++P  S        DLS FN+ DLLSLPQE K +LI+AL+ S
Subjt:  VDVLEDDDVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGAAAAAGCAAAGTTACTCACGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAACAAAGGAAAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
TAACCCCCATAACTTTGGTAGAATACTTCCCAAGGCGTTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCTCGTGTCACGTTGTGGACGTGCTGGAAGACGAC
GATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAACATAAAGGACTTATTGTCACTTCCTCAAGAAGCTAAAAGCGTCCTTATTGA
TGCATTGATGGGGTCTGGTGAGCCACATACAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCAGACCTAAAAAAGGGTGTAGCGTCTACAAGCCTTGTGAAAC
CCAAGCCTCAATCCTCTGTTTTCTCCTCTGTTTTACGGCTCCAAAAGTATCCAAAAGAGTCCCCCCAAAAACCTAGCCGAAAAGAAGCTTATATTCTGTTTTTTCGTCAT
AGCGTCAAGACGCTGTCAAGACAGCGTCTCGACGCTGCCTTCAAAACGCGCGTTTCTGGAAAGGAAAACTCGCAGCGTCGAGACGCTGTGACCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGAAAAAGCAAAGTTACTCACGGAAAGAGTCCCG
CCTATTTCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAACAAAGGAAAAAAGAAGACAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTC
TAACCCCCATAACTTTGGTAGAATACTTCCCAAGGCGTTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCTCGTGTCACGTTGTGGACGTGCTGGAAGACGAC
GATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAACATAAAGGACTTATTGTCACTTCCTCAAGAAGCTAAAAGCGTCCTTATTGA
TGCATTGATGGGGTCTGGTGAGCCACATACAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACTTCAGACCTAAAAAAGGGTGTAGCGTCTACAAGCCTTGTGAAAC
CCAAGCCTCAATCCTCTGTTTTCTCCTCTGTTTTACGGCTCCAAAAGTATCCAAAAGAGTCCCCCCAAAAACCTAGCCGAAAAGAAGCTTATATTCTGTTTTTTCGTCAT
AGCGTCAAGACGCTGTCAAGACAGCGTCTCGACGCTGCCTTCAAAACGCGCGTTTCTGGAAAGGAAAACTCGCAGCGTCGAGACGCTGTGACCTTTTAG
Protein sequenceShow/hide protein sequence
MKGSQEKYNSIEDENEGWTLVVRRKKKKQSYSRKESRLFRDSKRKVKSQRNKGKKKTRRSKPVVEESEDFFCPLTPITLVEYFPRRFLDDSQREALETVSCHVVDVLEDD
DVPASSSGTVAGPGDLSSFNIKDLLSLPQEAKSVLIDALMGSGEPHTDARKEAVEDVNTSDLKKGVASTSLVKPKPQSSVFSSVLRLQKYPKESPQKPSRKEAYILFFRH
SVKTLSRQRLDAAFKTRVSGKENSQRRDAVTF