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Spg020501 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020501
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold1:36176418..36179614
RNA-Seq ExpressionSpg020501
SyntenySpg020501
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026300.1 uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]1.7e-0137.29Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E LE V+CH ++  +++ +P  S        DL  F++ D LS PQE K+++I+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

KAA0026300.1 uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]8.3e-1764.47Show/hide
Query:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        +KKLL+EG+ +P +RKGLGYKSPE +RITR+GK K+ D N+ITVEEVD  +EK    QRTS F  IRP VAR LVF
Subjt:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

KAA0039307.1 uncharacterized protein E6C27_scaffold64G001020 [Cucumis melo var. makuwa]1.8e-1935.75Show/hide
Query:  HVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADARKEAVE--------DVNTADLKKGV-----------------
        H ++  E++ +P  S        +LS F++ DLLSLPQE K++LI+AL+ S    + A     E        D +  DL  G                  
Subjt:  HVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADARKEAVE--------DVNTADLKKGV-----------------

Query:  -----------------------ASTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPP
                                 + L   +KKLL EG+ +P +RKGLGYKSPEP+RITR+ K K+ D NHITV+EVD  +EK    QRTS F  I P 
Subjt:  -----------------------ASTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPP

Query:  VARTLVF
        VA   VF
Subjt:  VARTLVF

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-1763.75Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        L   +KKLL+EG+++P +RKGLGYKSPEP+RITR+GK K+ D NHITV+EVD  KEK    QRTS F  I P VART VF
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-0242.37Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E L  V+CH ++  E++ +P  S        DLS F++ DLLSLPQ+ K +LI+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.3e-1764.47Show/hide
Query:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        +KKLL+EG+ +P +RKGLGYKSPE +RITR+GK K+ D N+ITVEEVD  +EK    QRTS F  IRP VAR LVF
Subjt:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.9e-0339.71Show/hide
Query:  QGEALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADA
        Q E    V+CH ++  E++ +P  S        DLS F++ DLLSLPQE K++LI+AL+ S    + A
Subjt:  QGEALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADA

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]1.7e-0137.29Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E LE V+CH ++  +++ +P  S        DL  F++ D LS PQE K+++I+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]8.3e-1762.5Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        L   +KKLL+EG+++P +RKGLGYK PEP+RITR+GK KM D+NHITV+EVD  KEK    QRTS F  I P VAR  VF
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

TrEMBL top hitse value%identityAlignment
A0A5A7SJC0 Ribonuclease H8.1e-0237.29Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E LE V+CH ++  +++ +P  S        DL  F++ D LS PQE K+++I+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

A0A5A7SJC0 Ribonuclease H4.0e-1762.5Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        L   +KKLL+EG+++P +RKGLGYK PEP+RITR+GK KM D+NHITV+EVD  KEK    QRTS F  I P VAR  VF
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

A0A5A7TCJ6 Uncharacterized protein8.6e-2035.75Show/hide
Query:  HVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADARKEAVE--------DVNTADLKKGV-----------------
        H ++  E++ +P  S        +LS F++ DLLSLPQE K++LI+AL+ S    + A     E        D +  DL  G                  
Subjt:  HVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADARKEAVE--------DVNTADLKKGV-----------------

Query:  -----------------------ASTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPP
                                 + L   +KKLL EG+ +P +RKGLGYKSPEP+RITR+ K K+ D NHITV+EVD  +EK    QRTS F  I P 
Subjt:  -----------------------ASTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPP

Query:  VARTLVF
        VA   VF
Subjt:  VARTLVF

A0A5A7TJZ7 Retrotransposon gag protein1.1e-1763.75Show/hide
Query:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        L   +KKLL+EG+++P +RKGLGYKSPEP+RITR+GK K+ D NHITV+EVD  KEK    QRTS F  I P VART VF
Subjt:  LVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

A0A5A7TJZ7 Retrotransposon gag protein1.2e-0242.37Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E L  V+CH ++  E++ +P  S        DLS F++ DLLSLPQ+ K +LI+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

A0A5A7TJZ7 Retrotransposon gag protein4.0e-1764.47Show/hide
Query:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        +KKLL+EG+ +P +RKGLGYKSPE +RITR+GK K+ D N+ITVEEVD  +EK    QRTS F  IRP VAR LVF
Subjt:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

A0A5D3C0W6 Ty3-gypsy retrotransposon protein4.3e-0339.71Show/hide
Query:  QGEALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADA
        Q E    V+CH ++  E++ +P  S        DLS F++ DLLSLPQE K++LI+AL+ S    + A
Subjt:  QGEALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADA

A0A5D3C0W6 Ty3-gypsy retrotransposon protein4.0e-1764.47Show/hide
Query:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF
        +KKLL+EG+ +P +RKGLGYKSPE +RITR+GK K+ D N+ITVEEVD  +EK    QRTS F  IRP VAR LVF
Subjt:  KKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF

A0A5D3DD54 Ribonuclease H8.1e-0237.29Show/hide
Query:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS
        E LE V+CH ++  +++ +P  S        DL  F++ D LS PQE K+++I+AL+ S
Subjt:  EALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTAGCGTCGCGACGCTACATTGCACAGCGTCGCGACGCTGCAACGCACGCGGCTTGGGCAACACGAAAAGGTCAAGGAGAGGCACTTGAAACTGTCTCGTGTCA
CGTTGTGGACGTGGTGGAAGACGACGATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTC
AAGAAGCTAAAAGCGTCCTTATTGATGCATTGATGGGGTCTGGTGAGCCACAAGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACCGCCGACCTAAAAAAGGGT
GTAGCGTCTACAAGCCTTGTGAAACCTAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCGCAT
AACAAGAAGAGGGAAGGCGAAAATGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGTGAGTGTCGACCAACGAACTTCTGTTTTTAGGT
GCATCAGGCCACCAGTTGCTCGTACTTTAGTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTAGCGTCGCGACGCTACATTGCACAGCGTCGCGACGCTGCAACGCACGCGGCTTGGGCAACACGAAAAGGTCAAGGAGAGGCACTTGAAACTGTCTCGTGTCA
CGTTGTGGACGTGGTGGAAGACGACGATGTTCCTGCTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTC
AAGAAGCTAAAAGCGTCCTTATTGATGCATTGATGGGGTCTGGTGAGCCACAAGCAGATGCAAGAAAGGAAGCTGTTGAAGATGTGAATACCGCCGACCTAAAAAAGGGT
GTAGCGTCTACAAGCCTTGTGAAACCTAAGAAGAAACTTCTAAAGGAAGGTTATAGTCTGCCAACAACGAGAAAAGGGCTTGGATATAAGTCGCCAGAGCCGGTTCGCAT
AACAAGAAGAGGGAAGGCGAAAATGGCAGACACAAATCATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGTGAGTGTCGACCAACGAACTTCTGTTTTTAGGT
GCATCAGGCCACCAGTTGCTCGTACTTTAGTCTTTTAG
Protein sequenceShow/hide protein sequence
MGVASRRYIAQRRDAATHAAWATRKGQGEALETVSCHVVDVVEDDDVPASSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLIDALMGSGEPQADARKEAVEDVNTADLKKG
VASTSLVKPKKKLLKEGYSLPTTRKGLGYKSPEPVRITRRGKAKMADTNHITVEEVDDSKEKVSVDQRTSVFRCIRPPVARTLVF