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Spg020512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1:35866026..35874655
RNA-Seq ExpressionSpg020512
SyntenySpg020512
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2551.63Show/hide
Query:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---
        STGFSSK GG LVFSD LSI+   ++ +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+SSTW    
Subjt:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---

Query:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG
          SV +                   GS  IVRGDDVCWLHA+FRAK AGGPGG
Subjt:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.6e-2548.35Show/hide
Query:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIR----------------SSIWPRGNRSSLQTGELDKT---------------VEI
        VNLW F  F L +    +STGFSSK GG LVFSD LSI    ++ +                 S  PRGNR SLQT ELDKT               V I
Subjt:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIR----------------SSIWPRGNRSSLQTGELDKT---------------VEI

Query:  ELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
        ELPVPD LPTSAESS S+SSTW                           F+VS+GST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  ELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]8.7e-2737.82Show/hide
Query:  LHQHFKEGVKEEEEEEFLGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIRSSIW----------
        L +HF+E VK EEEEEF GLRLKKIGKSSCKA+HCRI       W             STGFSSK  G LVFSD LSI   +++ +   W          
Subjt:  LHQHFKEGVKEEEEEEFLGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIRSSIW----------

Query:  ---PRGNRSSLQTGELDK-------------------------------------------------------------------------------TVE
           PRGNRSSLQTG+LDK                                                                               ++E
Subjt:  ---PRGNRSSLQTGELDK-------------------------------------------------------------------------------TVE

Query:  IELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
        IEL VPDTLPTSAESS S+SSTW                       + S  IVR +DVCWLHAVFRAK+AGG GG
Subjt:  IELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.6e-2853.29Show/hide
Query:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGC-KRTIRSSIWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS
        VNLW F  F L +    +STGFSSK GG LV SD LSI    K   +  + PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS
Subjt:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGC-KRTIRSSIWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS

Query:  RSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
         S+SSTW                           F+VS+GST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  RSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2551.63Show/hide
Query:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---
        STGFSSK GG LVFSD LSI+   ++ +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+SSTW    
Subjt:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---

Query:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG
          SV +                   GS  IVRGDDVCWLHA+FRAK AGGPGG
Subjt:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.8e-2551.63Show/hide
Query:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---
        STGFSSK GG LVFSD LSI+   ++ +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+SSTW    
Subjt:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---

Query:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG
          SV +                   GS  IVRGDDVCWLHA+FRAK AGGPGG
Subjt:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UT17 CCHC-type domain-containing protein7.9e-2648.35Show/hide
Query:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIR----------------SSIWPRGNRSSLQTGELDKT---------------VEI
        VNLW F  F L +    +STGFSSK GG LVFSD LSI    ++ +                 S  PRGNR SLQT ELDKT               V I
Subjt:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIR----------------SSIWPRGNRSSLQTGELDKT---------------VEI

Query:  ELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
        ELPVPD LPTSAESS S+SSTW                           F+VS+GST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  ELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CAC6 Uncharacterized protein4.2e-2737.82Show/hide
Query:  LHQHFKEGVKEEEEEEFLGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIRSSIW----------
        L +HF+E VK EEEEEF GLRLKKIGKSSCKA+HCRI       W             STGFSSK  G LVFSD LSI   +++ +   W          
Subjt:  LHQHFKEGVKEEEEEEFLGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSIRGCKRTIRSSIW----------

Query:  ---PRGNRSSLQTGELDK-------------------------------------------------------------------------------TVE
           PRGNRSSLQTG+LDK                                                                               ++E
Subjt:  ---PRGNRSSLQTGELDK-------------------------------------------------------------------------------TVE

Query:  IELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
        IEL VPDTLPTSAESS S+SSTW                       + S  IVR +DVCWLHAVFRAK+AGG GG
Subjt:  IELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein2.2e-2853.29Show/hide
Query:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGC-KRTIRSSIWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS
        VNLW F  F L +    +STGFSSK GG LV SD LSI    K   +  + PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS
Subjt:  VNLWCFSRFEL-HRRDQESTGFSSKAGGSLVFSDVLSIRGC-KRTIRSSIWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESS

Query:  RSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG
         S+SSTW                           F+VS+GST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  RSSSSTW---------------------------FSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DR18 Gag/pol protein1.8e-2551.63Show/hide
Query:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---
        STGFSSK GG LVFSD LSI+   ++ +         WPRGNR  LQTGELDK                  VEIELP+PDTLPTSAESS S+SSTW    
Subjt:  STGFSSKAGGSLVFSDVLSIRGCKRTIR------SSIWPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSAESSRSSSSTWF---

Query:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG
          SV +                   GS  IVRGDDVCWLHA+FRAK AGGPGG
Subjt:  --SVSI-------------------GSTAIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGGCGACAACTTCGTTGTTCGGCCAGTAGGTGCGTTGTTCTCTCGCGAAATCCCTTCTCCCTCGCCGATCTCTCACTCTCGGTCTCTCTCTTCTCTGTTTTCTAG
TCATAGGCTTTCCAGTAGTCTTTTTCTTTACAGAATTTTCTTAAGTCTAAACTTCCTCATGTTTAACCTTTCTAACACACTAGGAGAGTTTAGCCTTGATGTTTTGAAAA
ACAAAAGCCTCATGATATCTGGAATTTCCCATAAATGTGACCGCATTTCTGGGAAGGCAAAATCCAAATGCGACCGCATTTCTGGGAAGACAGAGGCAGTTTCGAGTCCG
TCGCAGGACGGTGTTGAGTTTATGATCAGGCACGTTGTTTGTGCACCAGTTGGCACCAGGCATGTTTTCATGCGTCAGTTACTCCACCAGCACTTTAAGGAGGGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCGGGGGTGTAAACGT
ACAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGCGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTA
AGCTAGCAGGTGGTCCGGGAGGGGTTTTTGCAATTTATTTGTTATTCGTCAATGGCTTTGCAACGTGGTTCTTTCCTTTTCATCTCCTGCCTCCTCCTTACCATGTCTTT
TCCTTCCACACTCGTGGCAACTTCCAGAGCCATACTCGCATTAGTACCCAATCCAAAAGTCTTAATAATGTCGCAACGCTTGCTAGTGCAACAACATTAAATAAACCACC
ATCTCAACAGCTAGCTGAAGAGAAGGCTGGAAGTTCTAACGATTACAACACTTTTAAAGTTTCGAAGCAATCGAATACGAGTCCACAAATGCCTGACTCGACCTTTATAA
ACTGCAAACCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCACAATAATAACGTGCCTATGTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGGCGACAACTTCGTTGTTCGGCCAGTAGGTGCGTTGTTCTCTCGCGAAATCCCTTCTCCCTCGCCGATCTCTCACTCTCGGTCTCTCTCTTCTCTGTTTTCTAG
TCATAGGCTTTCCAGTAGTCTTTTTCTTTACAGAATTTTCTTAAGTCTAAACTTCCTCATGTTTAACCTTTCTAACACACTAGGAGAGTTTAGCCTTGATGTTTTGAAAA
ACAAAAGCCTCATGATATCTGGAATTTCCCATAAATGTGACCGCATTTCTGGGAAGGCAAAATCCAAATGCGACCGCATTTCTGGGAAGACAGAGGCAGTTTCGAGTCCG
TCGCAGGACGGTGTTGAGTTTATGATCAGGCACGTTGTTTGTGCACCAGTTGGCACCAGGCATGTTTTCATGCGTCAGTTACTCCACCAGCACTTTAAGGAGGGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCGGGGGTGTAAACGT
ACAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGCGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTA
AGCTAGCAGGTGGTCCGGGAGGGGTTTTTGCAATTTATTTGTTATTCGTCAATGGCTTTGCAACGTGGTTCTTTCCTTTTCATCTCCTGCCTCCTCCTTACCATGTCTTT
TCCTTCCACACTCGTGGCAACTTCCAGAGCCATACTCGCATTAGTACCCAATCCAAAAGTCTTAATAATGTCGCAACGCTTGCTAGTGCAACAACATTAAATAAACCACC
ATCTCAACAGCTAGCTGAAGAGAAGGCTGGAAGTTCTAACGATTACAACACTTTTAAAGTTTCGAAGCAATCGAATACGAGTCCACAAATGCCTGACTCGACCTTTATAA
ACTGCAAACCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCACAATAATAACGTGCCTATGTGCTAA
Protein sequenceShow/hide protein sequence
MGGDNFVVRPVGALFSREIPSPSPISHSRSLSSLFSSHRLSSSLFLYRIFLSLNFLMFNLSNTLGEFSLDVLKNKSLMISGISHKCDRISGKAKSKCDRISGKTEAVSSP
SQDGVEFMIRHVVCAPVGTRHVFMRQLLHQHFKEGVKEEEEEEFLGLRLKKIGKSSCKASHCRICVQPVNLWCFSRFELHRRDQESTGFSSKAGGSLVFSDVLSIRGCKR
TIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSTAIVRGDDVCWLHAVFRAKLAGGPGGVFAIYLLFVNGFATWFFPFHLLPPPYHVF
SFHTRGNFQSHTRISTQSKSLNNVATLASATTLNKPPSQQLAEEKAGSSNDYNTFKVSKQSNTSPQMPDSTFINCKPKGPIRWSAPNPIHNNNVPMC