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Spg020517 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020517
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionC3HC4-type RING finger
Genome locationscaffold1:36497769..36500517
RNA-Seq ExpressionSpg020517
SyntenySpg020517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI21615.3 unnamed protein product, partial [Vitis vinifera]2.8e-0451.22Show/hide
Query:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSY
        LL  +CA Q+++W C++LGY VC+LV  VW++G  +T CSY
Subjt:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSY
KAF9848570.1 hypothetical protein H0E87_002867 [Populus deltoides]3.7e-0459.46Show/hide
Query:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDT
        LL  +CA Q++IWTC++LGY +C+LV  VWH+GI DT
Subjt:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDT
XP_021630249.1 uncharacterized protein LOC110628088 isoform X1 [Manihot esculenta]1.1e-0550Show/hide
Query:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRL
        LL  +CA  ++IWTCT+LGY +CVLV G+W++G  +  C Y++I L
Subjt:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRL
XP_021672720.1 uncharacterized protein LOC110659165 isoform X1 [Hevea brasiliensis]5.7e-0546.81Show/hide
Query:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRLY
        LL  +CA+ ++IWTCTILGY + +LV  +W++G  +  C+Y++I LY
Subjt:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRLY
XP_038706234.1 uncharacterized protein LOC120001827 isoform X1 [Tripterygium wilfordii]9.7e-0548.94Show/hide
Query:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRLY
        +L  +CAYQ++IW  T+LG  VC+LV  VW++G+ +T CSY++I  Y
Subjt:  LLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRLY
TrEMBL top hitse value%identityAlignment
A0A385JIE4 C3HC4-type RING finger6.8e-0462.5Show/hide
Query:  CAYQDKIWTCTILGYFVCVLVPGVWHLGIEDT
        CA Q++IWTC++LGY +C+LV  VWH+GI DT
Subjt:  CAYQDKIWTCTILGYFVCVLVPGVWHLGIEDT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGCGACCCTGGGTTTACATGAGGATTTTGATGTTCTTTGCCCTAGTCATTAATTATCGGAACCTCAATGGTGTTAGGGTTAATACTTTGGATTGCGTTAGGAG
GTTTTTGCCCAAGTTTATTGGGCCCCAATGTTGTATCCTCGGTGGGAAAGTGATTGAGGACTTGGATCATCTCCTGTGGTCCTTTTGTGCTTACCAGGATAAAATATGGA
CCTGCACGATACTGGGCTATTTTGTTTGTGTTTTGGTTCCTGGTGTTTGGCATTTGGGCATCGAGGACACACACTGCTCATACGACGTAATCCGGTTGTATGAGTGTAAA
GTTGACATTGGGAAAGGTTCCATCCACTTAAGCGCTCCACCATCCAATCCTCTATATGCTCTGGCAAGCACCAAGAAAAACCCAACAGATTTGCTAAGAAGCTCCATGCC
ATATGGGCAAACTTACAATATAGAAATAGGTGATCCATTGATTCAACCCTATTCAAACAAAAGCTGCAAGTCGAAGGGGAGAGGTCCAATTCCTGAATTTTCTTTGCACC
TTATCATTTGTGTTAATACTTCTGAAAGGCTAAAGACCACAAAAAGGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGTTGCGACCCTGGGTTTACATGAGGATTTTGATGTTCTTTGCCCTAGTCATTAATTATCGGAACCTCAATGGTGTTAGGGTTAATACTTTGGATTGCGTTAGGAG
GTTTTTGCCCAAGTTTATTGGGCCCCAATGTTGTATCCTCGGTGGGAAAGTGATTGAGGACTTGGATCATCTCCTGTGGTCCTTTTGTGCTTACCAGGATAAAATATGGA
CCTGCACGATACTGGGCTATTTTGTTTGTGTTTTGGTTCCTGGTGTTTGGCATTTGGGCATCGAGGACACACACTGCTCATACGACGTAATCCGGTTGTATGAGTGTAAA
GTTGACATTGGGAAAGGTTCCATCCACTTAAGCGCTCCACCATCCAATCCTCTATATGCTCTGGCAAGCACCAAGAAAAACCCAACAGATTTGCTAAGAAGCTCCATGCC
ATATGGGCAAACTTACAATATAGAAATAGGTGATCCATTGATTCAACCCTATTCAAACAAAAGCTGCAAGTCGAAGGGGAGAGGTCCAATTCCTGAATTTTCTTTGCACC
TTATCATTTGTGTTAATACTTCTGAAAGGCTAAAGACCACAAAAAGGCCTTGA
Protein sequenceShow/hide protein sequence
MMLRPWVYMRILMFFALVINYRNLNGVRVNTLDCVRRFLPKFIGPQCCILGGKVIEDLDHLLWSFCAYQDKIWTCTILGYFVCVLVPGVWHLGIEDTHCSYDVIRLYECK
VDIGKGSIHLSAPPSNPLYALASTKKNPTDLLRSSMPYGQTYNIEIGDPLIQPYSNKSCKSKGRGPIPEFSLHLIICVNTSERLKTTKRP